View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17170_low_8 (Length: 211)
Name: NF17170_low_8
Description: NF17170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17170_low_8 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 37050255 - 37050083
Alignment:
| Q |
18 |
cagagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggtaagttaatggattttgaaatgataattcagtaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37050255 |
cagagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggtaagttaatggattttgaaatgataattcagtaa |
37050156 |
T |
|
| Q |
118 |
ataaatcaggaaatttcatttcaacaataagtacaggttataaaaaatatgaggaaagaacaaatgtgtttta |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
37050155 |
ataaatcaggaaatttcatttcaacaataagtacaggttataaaaagtaggaggaaagaacaaatgtgtttta |
37050083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 8690121 - 8690185
Alignment:
| Q |
20 |
gagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggt |
84 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||| |
|
|
| T |
8690121 |
gagagaaaatacagtgtctggatcggaggttccatcttggcatctcttagcaccttccagcaggt |
8690185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 68734 - 68801
Alignment:
| Q |
18 |
cagagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggta |
85 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| || |||||||| |||||||||||| |
|
|
| T |
68734 |
cagagaggaagtatagtgtctggattggaggctccattttggcttccctcagcaccttccaacaggta |
68801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 59072 - 59008
Alignment:
| Q |
20 |
gagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggt |
84 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || |||||||| || ||||| ||||||||||| |
|
|
| T |
59072 |
gagagaaagtacagtgtctggattggtggttctatcttggcatccctaagcaccttccaacaggt |
59008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 1261918 - 1261853
Alignment:
| Q |
20 |
gagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggta |
85 |
Q |
| |
|
|||||||||||||||||||||||||| || || || |||||||| ||||| || || ||||||||| |
|
|
| T |
1261918 |
gagaggaagtacagtgtctggattggtgggtctatcttggcatcactcagtacctttcaacaggta |
1261853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 43646941 - 43646875
Alignment:
| Q |
18 |
cagagaggaagtacagtgtctggattggaggttccattttggcatctctcagcactttccaacaggt |
84 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || || | || |||||||| |||||||| ||||| |
|
|
| T |
43646941 |
cagagagaaagtacagtgtctggattggaggatcaatccttgcttctctcagtactttccagcaggt |
43646875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University