View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17171_high_2 (Length: 314)

Name: NF17171_high_2
Description: NF17171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17171_high_2
NF17171_high_2
[»] chr4 (18 HSPs)
chr4 (19-295)||(2621017-2621293)
chr4 (135-292)||(2367648-2367805)
chr4 (165-290)||(2486239-2486364)
chr4 (182-277)||(5106333-5106428)
chr4 (167-288)||(2547466-2547587)
chr4 (182-295)||(5102106-5102219)
chr4 (155-276)||(12124770-12124891)
chr4 (179-279)||(2472035-2472135)
chr4 (165-288)||(2491062-2491185)
chr4 (239-294)||(2382562-2382617)
chr4 (182-276)||(2519179-2519273)
chr4 (165-279)||(2525700-2525814)
chr4 (135-276)||(2373212-2373352)
chr4 (194-294)||(2391036-2391136)
chr4 (165-284)||(2467468-2467587)
chr4 (168-210)||(1517029-1517071)
chr4 (165-294)||(5035550-5035679)
chr4 (162-250)||(12126852-12126940)
[»] chr7 (1 HSPs)
chr7 (182-279)||(2576415-2576512)
[»] chr1 (1 HSPs)
chr1 (179-279)||(15837979-15838079)
[»] chr5 (1 HSPs)
chr5 (154-210)||(12846948-12847004)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 2621017 - 2621293
Alignment:
Q  19 aaaaactgtggcatcatcattatcataatcattgacattcaatattccaaaaacaatggcggaaacatgttcattcttaccagaggagtggtgggagtgt 118  Q
    ||||| ||||||||||||||| ||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621017 aaaaaatgtggcatcatcattgtcatagttattgacatccaatattccacaaacaatggcggaaacatgttcattcttaccagaggagtggtgggagtgt 2621116  T
Q  119 atcttcaagttagttgacgacggcgacaacaaccattacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttct 218  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2621117 atcttcaagttagttgacgatggcgacaacaaccattactgggaacctctctccctcgtatccaaacagtttttgtccatcaccaaccgtctacggttct 2621216  T
Q  219 ccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaac 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621217 ccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaac 2621293  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 135 - 292
Target Start/End: Original strand, 2367648 - 2367805
Alignment:
Q  135 acgacggcgacaacaaccattacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccga 234  Q
    ||||| ||||||||||||  |||||||||||||| ||| |||| |||||||| ||| | ||||||||||||||||| || ||||||||  |||| |||||    
T  2367648 acgacagcgacaacaaccgctacttggaacctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctccatagcaatgtccga 2367747  T
Q  235 taaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctc 292  Q
    |||||| ||||||||| ||  |||||| ||| | |||||||| ||  |||||||||||    
T  2367748 taaaacaatccctttcctttatcgccttttccaaaggttccccaacctcacatccctc 2367805  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 165 - 290
Target Start/End: Complemental strand, 2486364 - 2486239
Alignment:
Q  165 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 264  Q
    ||||||||||||| || ||||||||| ||||||||||||||||||| || |||||  ||||||||||||| ||||| ||||||||| ||| ||| |||||    
T  2486364 ctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttcatcgtctctt 2486265  T
Q  265 cgacaggttccctaatatcacatccc 290  Q
      |  ||||||||||| | |||||||    
T  2486264 ttatgggttccctaatgttacatccc 2486239  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 277
Target Start/End: Original strand, 5106333 - 5106428
Alignment:
Q  182 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccct 277  Q
    ||||||||||||||||||||||||||||  || |||||  |||||||| |  || |||||||||||||||||| |||||||||| | |||||||||    
T  5106333 aaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatcactaatcaaaccatccctttcattcatcgcctcttcaaaaggttccct 5106428  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 288
Target Start/End: Complemental strand, 2547587 - 2547466
Alignment:
Q  167 ctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcg 266  Q
    |||||| |||| |||||||||||| ||||||||||||||||||| ||||||||  |||||||||||  | | | ||||| || | |||||| | |||||     
T  2547587 ctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctccagtcatatcatcctttcccttcctcacttcttcc 2547488  T
Q  267 acaggttccctaatatcacatc 288  Q
    | ||||||||||| ||||||||    
T  2547487 aaaggttccctaacatcacatc 2547466  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 295
Target Start/End: Original strand, 5102106 - 5102219
Alignment:
Q  182 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaata 281  Q
    |||||||||||||| ||||| ||  |||| || |||||  |||||||| | |||  |||||||||||||||||||| ||| ||||| |||||||||||      
T  5102106 aaacagtttttgtctatcactaatagtcttcgattctcggtcacaatcactgatcgaaccatccctttcattcctctccttttcgaaaggttccctaacg 5102205  T
Q  282 tcacatccctcaac 295  Q
    ||||||| ||||||    
T  5102206 tcacatcactcaac 5102219  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 12124891 - 12124770
Alignment:
Q  155 tacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattc 254  Q
    |||||||||||||||||| | || |||||||| ||| | ||||||||||||||||| |  || |||||| ||||||| ||| |||| ||||||||| ||     
T  12124891 tacttggaacctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattttccatcgcaatctctgatgaaacaatccctttccttg 12124792  T
Q  255 ctcgcctcttcgacaggttccc 276  Q
      ||||||||| | ||||||||    
T  12124791 accgcctcttccaaaggttccc 12124770  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 2472135 - 2472035
Alignment:
Q  179 tccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttcccta 278  Q
    |||||||||||||| ||||||||||| |||||  | |||||| ||||||||| |  | |||| ||||||||| ||| || ||||||||| ||||||||||    
T  2472135 tccaaacagtttttctccatcaccaatcgtctctgattctccctcacaatctactgtgaaacaatccctttccttcatcacctcttcgaaaggttcccta 2472036  T
Q  279 a 279  Q
    |    
T  2472035 a 2472035  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 288
Target Start/End: Complemental strand, 2491185 - 2491062
Alignment:
Q  165 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 264  Q
    ||||||| ||||| || ||||||||| |||||||||| |||||||| || || ||  ||||||||||||||  ||| ||||||||| ||  ||| |||||    
T  2491185 ctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttccttaatcgtctctt 2491086  T
Q  265 cgacaggttccctaatatcacatc 288  Q
     || ||||||||||| || |||||    
T  2491085 tgaaaggttccctaacattacatc 2491062  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 2382562 - 2382617
Alignment:
Q  239 accatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaa 294  Q
    |||||||||||||||||||||||||||   ||| |||||||| |||||||||||||    
T  2382562 accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaa 2382617  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 2519273 - 2519179
Alignment:
Q  182 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccc 276  Q
    ||||||||| ||||||||||||||||| | || | |||  |||||||||| ||| |||| ||||||||| ||| ||| ||||| || ||||||||    
T  2519273 aaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttccc 2519179  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 2525814 - 2525700
Alignment:
Q  165 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 264  Q
    ||||||||||||| || ||||||||| |||||||||||||| |||| || ||||   ||||||||||| ||  ||| ||||||||  ||  ||| |||||    
T  2525814 ctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattcttggtcacaatctccaatgcaactatcccttttcttaatcgtctctt 2525715  T
Q  265 cgacaggttccctaa 279  Q
     || |||||||||||    
T  2525714 tgaaaggttccctaa 2525700  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 276
Target Start/End: Original strand, 2373212 - 2373352
Alignment:
Q  135 acgacggcgacaacaaccattacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccga 234  Q
    |||||||| |||||| ||  ||||| |||||||||||| | || |||||||| ||| | ||||||||||| | ||| || ||||||||  |||| | |||    
T  2373212 acgacggcaacaacagccgctacttcgaacctctctccgttgtttccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgt-cga 2373310  T
Q  235 taaaaccatccctttcattcctcgcctcttcgacaggttccc 276  Q
    |||||| || |||||| ||  |||||||||| | ||||||||    
T  2373311 taaaacaattcctttccttaatcgcctcttccaaaggttccc 2373352  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 2391036 - 2391136
Alignment:
Q  194 tccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctca 293  Q
    ||||||||||||  ||| || |||||||||| |||| || |  |||||||||||||||||||||   ||||| |  ||||| ||||| ||||||||||||    
T  2391036 tccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctca 2391135  T
Q  294 a 294  Q
    |    
T  2391136 a 2391136  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 284
Target Start/End: Complemental strand, 2467587 - 2467468
Alignment:
Q  165 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 264  Q
    |||||||| |||| || ||||||||||||||||| |||||| |||| || |||||| || | || |||||   ||| ||||||||  ||| ||| |||||    
T  2467587 ctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttcatcgtctctt 2467488  T
Q  265 cgacaggttccctaatatca 284  Q
     || |||||||| |||||||    
T  2467487 tgaaaggttccccaatatca 2467468  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 1517029 - 1517071
Alignment:
Q  168 tctccctcgtgtccaaacagtttttgtccatcaccaaccgtct 210  Q
    |||||||||| |||||||| || ||||||||||||||||||||    
T  1517029 tctccctcgtttccaaacaattcttgtccatcaccaaccgtct 1517071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 294
Target Start/End: Complemental strand, 5035679 - 5035550
Alignment:
Q  165 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 264  Q
    |||| ||| |||| || ||||||||| | ||||||||||||||||| || ||||   ||| |||||| ||   ||| ||||||||| ||  ||| |||||    
T  5035679 ctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttccttagtcgtctctt 5035580  T
Q  265 cgacaggttccctaatatcacatccctcaa 294  Q
     || |||||||||||||| ||||| |||||    
T  5035579 tgaaaggttccctaatattacatcactcaa 5035550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 12126940 - 12126852
Alignment:
Q  162 aacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttc 250  Q
    ||||||||||| | || |||||||| ||| | ||||||||||||||||| |  ||||||||| || |||| ||| |||  |||||||||    
T  12126940 aacctctctccattgtctccaaacaatttctctccatcaccaaccgtctcctattctccatcgcagtctcagatgaaaaaatccctttc 12126852  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 2576415 - 2576512
Alignment:
Q  182 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaa 279  Q
    ||||||||||| ||||||||||| ||||| || |||||  |||||||| |||||  ||||||||||||||||  |||||||||||| ||| |||||||    
T  2576415 aaacagtttttatccatcaccaatcgtcttcgattctcggtcacaatcaccgattgaaccatccctttcatttgtcgcctcttcgaaaggatccctaa 2576512  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 15837979 - 15838079
Alignment:
Q  179 tccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttcccta 278  Q
    |||||||||||| | ||||||||||||||||| || |||||| ||| ||||   ||| |||| |||||||||||||||  ||||||| | ||||||||||    
T  15837979 tccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattcctaacctcttccaaaggttcccta 15838078  T
Q  279 a 279  Q
    |    
T  15838079 a 15838079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 12847004 - 12846948
Alignment:
Q  154 ttacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtct 210  Q
    ||||||||||| |||||||||||| ||||| |||||  | |||||||||||||||||    
T  12847004 ttacttggaacatctctccctcgtttccaagcagttcctctccatcaccaaccgtct 12846948  T

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