View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17171_high_7 (Length: 216)
Name: NF17171_high_7
Description: NF17171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17171_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 50588100 - 50587931
Alignment:
| Q |
35 |
agttaggacaaaaatagaggtgtgaaattgtagcatatgtcattatttggaatattttttagatttcagttgttgcacccaagaggaatgcctcagaaaa |
134 |
Q |
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| T |
50588100 |
agttaggacaaaaatagaggtgtgaaattgtagcatatgtcattatttggaatattttttagatttcagttgttgcacccaagaggaatgcctcagaaaa |
50588001 |
T |
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| Q |
135 |
acagcaaaactatacagaactacgttatgaaattaatctagtctttgaattcattcgtttggtgtaatgt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50588000 |
acagcaaaactatacagaactacgttatgaaattaatctagtctttgaattcattcttttggtgtaatgt |
50587931 |
T |
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