View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17171_low_6 (Length: 236)
Name: NF17171_low_6
Description: NF17171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17171_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 1204882 - 1204668
Alignment:
| Q |
1 |
ccctgagctaacctttccttcatcgttccttgcatcaccatagtccctcactctttttgcaccgaccaaaatgggtcccacattggttgcatcagccact |
100 |
Q |
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| T |
1204882 |
ccctgagctaacctttccttcatcgttccttgcatcaccatagtccctcactctttttgcaccgaccaaaatgggtcccacattggttgcatcagccact |
1204783 |
T |
|
| Q |
101 |
acaaagttcatgagtatatcttcacaatttcgaactgaatcaacaatcttcctcatttcggccatgtgaggtccaccctcacagctatatctgcatgagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| |
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| T |
1204782 |
acaaagttcatgagtatatcttcacaatttcgaactgaatcaacaatcttcctcatttcggccatgtgatgtccaccctcgcagctatatctgaatgagt |
1204683 |
T |
|
| Q |
201 |
ttaatgatagtggat |
215 |
Q |
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||||||||||||||| |
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| T |
1204682 |
ttaatgatagtggat |
1204668 |
T |
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