View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17171_low_9 (Length: 203)
Name: NF17171_low_9
Description: NF17171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17171_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 6494128 - 6494000
Alignment:
| Q |
1 |
aggaatagatcctttcattacaattcaagaagttgcaagccatgtccataaaatcccgcgatacattgattccgataagacaactcttaaagaaattaac |
100 |
Q |
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| T |
6494128 |
aggaatagatcctttcattacaattcaagaagttgcaagccatgtccat----------ggtacattgattccgataagacaactcttaaagaaattaac |
6494039 |
T |
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| Q |
101 |
tttaagcccggatgccatctcaaaaccccttaaaagagc |
139 |
Q |
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| T |
6494038 |
tttaagcctggatgccatctcaaaaccccttaaaagagc |
6494000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 44691728 - 44691624
Alignment:
| Q |
80 |
acaactcttaaagaaattaactttaagcccggatgccatctcaaaaccccttaaaagagccatgagcacccattaattgttcaccgtcgccttccctata |
179 |
Q |
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| T |
44691728 |
acaacttttaaagaaattaactcttaaaccggacaccatctcaaaaccccttaagagagctttcaacacccataaattttccaccgtagctttccccata |
44691629 |
T |
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| Q |
180 |
caaat |
184 |
Q |
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||||| |
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| T |
44691628 |
caaat |
44691624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 38906891 - 38906849
Alignment:
| Q |
10 |
tcctttcattacaattcaagaagttgcaagccatgtccataaa |
52 |
Q |
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| T |
38906891 |
tcctttgactacaattcaagaagttgcaagccatctccataaa |
38906849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 9367507 - 9367574
Alignment:
| Q |
63 |
acattgattccgataagacaactcttaaagaaattaactttaagcccggatgccatctcaaaacccct |
130 |
Q |
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| T |
9367507 |
acattaattcccatcaaacaactcttataaaaattaactttaagacccgaagccatctcaaaacccct |
9367574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 43075135 - 43075240
Alignment:
| Q |
19 |
tacaattcaagaagttgcaagccatgtccataaaatcccgcgatacattgattccgataagacaactcttaaagaaattaactttaagcccggatgccat |
118 |
Q |
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| T |
43075135 |
tacaattcaagaaattgcacgccatattcataaaatccgggttgacattgattcccatcaaacaactcttataaaaattcacctttaacccggaagccat |
43075234 |
T |
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| Q |
119 |
ctcaaa |
124 |
Q |
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| T |
43075235 |
ctcaaa |
43075240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 14457935 - 14457830
Alignment:
| Q |
19 |
tacaattcaagaagttgcaagccatgtccataaaatcccgcgatacattgattccgataagacaactcttaaagaaattaactttaagcccggatgccat |
118 |
Q |
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| T |
14457935 |
tacaattcaaaaagtttcacgccatatccataaattccgtcgccacattaattcccatcaaacaactcttataaaaattaaccttcaatccggatgccat |
14457836 |
T |
|
| Q |
119 |
ctcaaa |
124 |
Q |
| |
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|||||| |
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| T |
14457835 |
ctcaaa |
14457830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 14431847 - 14431795
Alignment:
| Q |
80 |
acaactcttaaagaaattaactttaagcccggatgccatctcaaaacccctta |
132 |
Q |
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|||||||||| | || |||||||| |||||||| |||||||||||||| |||| |
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| T |
14431847 |
acaactcttataaaagttaacttttagcccggaagccatctcaaaacctctta |
14431795 |
T |
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