View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17172_low_2 (Length: 413)
Name: NF17172_low_2
Description: NF17172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17172_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 175 - 405
Target Start/End: Original strand, 1480921 - 1481152
Alignment:
| Q |
175 |
aagatggtttaactctatcctttgatattgtaataatggtacctaaatgtatatgatagcataaggaaaacaagtttaaacaaattagaaagaaataatt |
274 |
Q |
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| T |
1480921 |
aagaaggtttaactctatcctttgatattgtaataatggtacctaaatgtatatgatagcataaggaaatcaagtttaaacaaattagaaagaaataatt |
1481020 |
T |
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| Q |
275 |
tttagatgaatcatttagggagc-cctaatatggaccccaaattaaaaggaccaccaatgaacctcaacaagtgacaggctacagccgatcattgttctt |
373 |
Q |
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| T |
1481021 |
tttagatgaatcatttagggagctcctaatatggacctcaaattaaaaggaccaccaatgaacctcaataagtgacaggctacagccggtcattgttctt |
1481120 |
T |
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| Q |
374 |
caacactcaaaacacaacacatgtttcatctc |
405 |
Q |
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| T |
1481121 |
caacactcaaaacacagcacatgtttcatctc |
1481152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1480863 - 1480928
Alignment:
| Q |
1 |
tttttgttatttggtgatgatgttgagtaaattaaggaatgtaaattaatttaccataaagaaggt |
66 |
Q |
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| T |
1480863 |
tttttgttatttggtgatgatgttgagtaaactaaggaatgtaaattaatttaccataaagaaggt |
1480928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 1496329 - 1496445
Alignment:
| Q |
106 |
gtgccatgtaacttcctagcacaacacgagttgcaagtatctcggttagttttcaactgtctggtattgaagatggtttaactctatcctttgatattgt |
205 |
Q |
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| T |
1496329 |
gtgccatgtaacttcctaggacaacaccagtagcaaatatctccctcagtttccaactatcaggtagtggagatggtttcactctatcctttgatattgt |
1496428 |
T |
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| Q |
206 |
aataatggtacctaaat |
222 |
Q |
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| T |
1496429 |
cataatggtacctaaat |
1496445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 1463323 - 1463207
Alignment:
| Q |
108 |
gccatgtaacttcctagcacaacacgagttgcaagtatctcggttagttttcaactgtctggtattgaagatggtttaactctatcctttgatattgtaa |
207 |
Q |
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||||||||||| || ||||||| || ||| |||| ||| || ||||||| || || || |||| || |||||||||||||||||||||||||||||| | |
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| T |
1463323 |
gccatgtaactgccaagcacaataccagtagcaaatatttcctttagtttccagctatcaggtagtggagatggtttaactctatcctttgatattgtca |
1463224 |
T |
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| Q |
208 |
taatggtacctaaatgt |
224 |
Q |
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| T |
1463223 |
taatggtacctacatgt |
1463207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 36701013 - 36700906
Alignment:
| Q |
298 |
cctaatatggaccccaaattaaaaggaccaccaatgaacctcaacaagtgacaggctacagccgatcattgttcttcaacactcaaaacacaacacatgt |
397 |
Q |
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| T |
36701013 |
cctaatatggaccccaaattaaaaggaccaccaatgaacctcaacaagtgacaggctacagccggtcattgttcttcaacacacaaaacataacatatgt |
36700914 |
T |
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| Q |
398 |
ttcatctc |
405 |
Q |
| |
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|||||||| |
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| T |
36700913 |
ttcatctc |
36700906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 50276861 - 50276748
Alignment:
| Q |
106 |
gtgccatgtaacttcctagcacaacacgagttgcaagtatctcggttagttttcaactgtctggtattgaagatggtttaactctatcctttgatattgt |
205 |
Q |
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|||||||||| || ||||||||||||| ||| |||| |||||| | ||||| ||||||||||| |||| ||||||||| ||||||||||| |||||||| |
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| T |
50276861 |
gtgccatgtagctacctagcacaacaccagtagcaaatatctctctcagtttccaactgtctggcattggagatggttttactctatccttggatattgt |
50276762 |
T |
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| Q |
206 |
aataatggtaccta |
219 |
Q |
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| T |
50276761 |
cataatggtaccta |
50276748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 26791083 - 26790960
Alignment:
| Q |
106 |
gtgccatgtaacttcctagcacaacacgagttgcaagtatctcggttagttttcaactgtctggtattgaagatggtttaactctatcctttgatattgt |
205 |
Q |
| |
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||||||||||||| || ||||||| || ||| |||| |||||| | ||||| ||||| || || | || |||||||||||||||||||||||||||||| |
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| T |
26791083 |
gtgccatgtaactgccaagcacaataccagtagcaaatatctccttaagtttccaactatcaggcaatggagatggtttaactctatcctttgatattgt |
26790984 |
T |
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| Q |
206 |
aataatggtacctaaatgtatatg |
229 |
Q |
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||||||||||||| ||| ||||| |
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| T |
26790983 |
cataatggtacctacatgcatatg |
26790960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 13848400 - 13848348
Alignment:
| Q |
297 |
ccctaatatggaccccaaattaaaaggaccaccaatgaacctcaacaagtgac |
349 |
Q |
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| T |
13848400 |
ccctaatatggacctcaaattaaagggaccatgagtgaacctcaacaaatgac |
13848348 |
T |
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