View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17172_low_4 (Length: 370)
Name: NF17172_low_4
Description: NF17172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17172_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 29034937 - 29035277
Alignment:
| Q |
18 |
aagtcaaggtgtgtactcagttgctaccccttttcacccttttggtggtgctgttgatgtgattgttgttcagcaacaagatggtacatttagaagtaca |
117 |
Q |
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| T |
29034937 |
aagtcaaggtgtgtactcagttgctaccccttttcacccttttggtggtgctgttgatgtgattgttgttcagcaacaagatggtacatttagaagtaca |
29035036 |
T |
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| Q |
118 |
ccttggtatgttaggtttggtaaatttcaaggtgttcttaaaggtgctgaaaaagttgttagaataagtgttaatggtgttgagtctaactttcatatgt |
217 |
Q |
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| T |
29035037 |
ccttggtatgttaggtttggtaaatttcaaggtgttcttaaaggtgctgaaaaagttgttagaataagtgttaatggtgttgagtctaactttcatatgt |
29035136 |
T |
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| Q |
218 |
atcttgataattctggggaggcttattttgtgaaggatgcggatgaggataaaggggttgatcttgatcaagattctagtagtaaaagtgataatttttt |
317 |
Q |
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| T |
29035137 |
atcttgataattctggggaggcttattttgtgaaggatgcggatgaggataaaggggttgatcttgatcaagattctagtagtaaaagtgataatttttt |
29035236 |
T |
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| Q |
318 |
gagtaatggtcatagacttgatcatagtatttcggattctg |
358 |
Q |
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| T |
29035237 |
gagtaatggtcatagacttgatcatagtatttcggattctg |
29035277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 25 - 267
Target Start/End: Original strand, 40410231 - 40410473
Alignment:
| Q |
25 |
ggtgtgtactcagttgctaccccttttcacccttttggtggtgctgttgatgtgattgttgttcagcaacaagatggtacatttagaagtacaccttggt |
124 |
Q |
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| T |
40410231 |
ggtgtttattcagttgccaccccttttcacccctttggtggtgccgttgatgtcattgttgttcagcaacaagatggaacttttcggagcacgccttggt |
40410330 |
T |
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| Q |
125 |
atgttaggtttggtaaatttcaaggtgttcttaaaggtgctgaaaaagttgttagaataagtgttaatggtgttgagtctaactttcatatgtatcttga |
224 |
Q |
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|||| |||||||||||||||||||||||||| ||| |||| || || |||||| |||| |||||| || ||||| | || ||||||||||||||||| |
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| T |
40410331 |
atgtaaggtttggtaaatttcaaggtgttctcaaacgtgccgagaagattgttaagataaatgttaacggggttgaagcgaattttcatatgtatcttga |
40410430 |
T |
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| Q |
225 |
taattctggggaggcttattttgtgaaggatgcggatgaggat |
267 |
Q |
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| T |
40410431 |
taattctggagaggcttattttgtaaaagaggtggatgaggat |
40410473 |
T |
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