View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17173_high_3 (Length: 241)
Name: NF17173_high_3
Description: NF17173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17173_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 4840901 - 4840696
Alignment:
| Q |
19 |
ttcaccatcatcacaatccaatgacaatggagaaaaggaatcttccgtggataagataacattttattggagtttcacagcatcttacataacaatattg |
118 |
Q |
| |
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|||| |||||||||||||||||||| | |||||||||||| | ||||| | |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4840901 |
ttcagcatcatcacaatccaatgacgacggagaaaaggaaaccatggtggacatgataactttttattggagtttcacagcatcttacataacaatattg |
4840802 |
T |
|
| Q |
119 |
ttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaaattttccat |
218 |
Q |
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|| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4840801 |
ttagccttcataacagtgttgtgcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaacttttccat |
4840702 |
T |
|
| Q |
219 |
tttatt |
224 |
Q |
| |
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| |||| |
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|
| T |
4840701 |
tgtatt |
4840696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 5197364 - 5197569
Alignment:
| Q |
21 |
caccatcatcacaatccaatgacaatggagaaaaggaatcttccgtggataagataacattttattggagtttcacagcatcttacataacaatattgtt |
120 |
Q |
| |
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|||||||||| |||||||||||||||| |||| ||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
5197364 |
caccatcatcccaatccaatgacaatgaagaagaggaaactggtgtggacatgataacattttattggagtttcacagcatcttacataacaatactatt |
5197463 |
T |
|
| Q |
121 |
ggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaaattttccattt |
220 |
Q |
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|||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
5197464 |
ggccttcataacagtgttgtgcatcaatccacgttggcgcatggcctggttttattacatcagtaagtttatgcgtagattctttccaacttttccattg |
5197563 |
T |
|
| Q |
221 |
tattga |
226 |
Q |
| |
|
|||||| |
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|
| T |
5197564 |
tattga |
5197569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 5174621 - 5174828
Alignment:
| Q |
19 |
ttcaccatcatcacaatccaatgacaatggagaaaaggaatcttccgtggataagataacattttattggagtttcacagcatcttacataacaatattg |
118 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||| | ||||| | |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5174621 |
ttcagcatcatcacaatccaatgacgacggagaaaaggaaaccatggtggacatgataactttttattggagtttcacagcatcttacataacaatattg |
5174720 |
T |
|
| Q |
119 |
ttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaaattttccat |
218 |
Q |
| |
|
|||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
5174721 |
ttggccctcataacagttttgtgcatcaatccacgttggcgtatggcctggttttattatatcagtaagtttatgcgtagattttttccaacttttccat |
5174820 |
T |
|
| Q |
219 |
tttattga |
226 |
Q |
| |
|
| |||||| |
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|
| T |
5174821 |
tgtattga |
5174828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 5215507 - 5215714
Alignment:
| Q |
19 |
ttcaccatcatcacaatccaatgacaatggagaaaaggaatcttccgtggataagataacattttattggagtttcacagcatcttacataacaatattg |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5215507 |
ttcaccttcatcacaatccaatgacaatggagaaaaggaaaccatggtggacatgataacattttattggagtttcacagcatcttacataacaatacta |
5215606 |
T |
|
| Q |
119 |
ttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaaattttccat |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |
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|
| T |
5215607 |
ttggccttcataacagtgttgtgcgtcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtaaaatttttccaacgtttccat |
5215706 |
T |
|
| Q |
219 |
tttattga |
226 |
Q |
| |
|
| |||||| |
|
|
| T |
5215707 |
tgtattga |
5215714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 5183963 - 5184173
Alignment:
| Q |
19 |
ttcaccatcatcacaatccaatgacaatggagaaaaggaatcttccgtggataagataacattttattggagtttcacagcatcttacataacaatattg |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| || | ||||| | ||||||||||||||||||||||| | ||||||| || |||||| | |
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|
| T |
5183963 |
ttcaccttcatcacaatccaatgacaatggagaaaagcaaaccatggtggacatgataacattttattggagtttcataacatcttatattacaatacta |
5184062 |
T |
|
| Q |
119 |
ttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaaattttccat |
218 |
Q |
| |
|
|||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
5184063 |
ttggccttcataactgtgttgggcatcaatccacgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattctttccatcttttccat |
5184162 |
T |
|
| Q |
219 |
tttattgatga |
229 |
Q |
| |
|
| ||||||||| |
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|
| T |
5184163 |
tatattgatga |
5184173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 5161680 - 5161853
Alignment:
| Q |
19 |
ttcaccatcatcacaatccaatgacaatggagaaaaggaatcttccgtggataagataacattttattggag-tttc-acagcatcttacataacaatat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||| | ||||| | |||||||||||||||||| |||| |||||||||||||||||||||| |
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|
| T |
5161680 |
ttcaccatcatcacaatccaatgacaatgaagaagaggaaacaaatgtggacatgataacattttattggaggtttctacagcatcttacataacaatat |
5161779 |
T |
|
| Q |
117 |
tgttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagttt |
190 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
5161780 |
tgttggccttcgtaacagtgttgtgtatcaatgctcgttggcgtatggcttggttttattacattagtaagttt |
5161853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 4855407 - 4855204
Alignment:
| Q |
19 |
ttcaccatcatcacaatccaatgacaatggagaaaaggaatcttccgtggataagataacattttattggagtttcacagcatcttacataacaatattg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||| | ||||| | ||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
4855407 |
ttcaccatcatcacaatccaatgacaatgaagaagaggaaacaaatgtggacatgataacattttattggagtttcacaccatcttacataacaatacta |
4855308 |
T |
|
| Q |
119 |
ttggccttcataacagtgttgtgcatcaatgcatgttggcgtatggcctggttttattacatcagtaagtttatgcgtagattttttccaaattttccat |
218 |
Q |
| |
|
|| ||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||| ||||||||| | ||| |||||||||| |||||||| |
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|
| T |
4855307 |
ctgaccttcataacagtgt--tgcatcaatccacgttggcgtttggcctggttttattacattagtaagtttgtaggtatcttttttccaacttttccat |
4855210 |
T |
|
| Q |
219 |
tttatt |
224 |
Q |
| |
|
| |||| |
|
|
| T |
4855209 |
tgtatt |
4855204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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