View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17173_low_1 (Length: 719)
Name: NF17173_low_1
Description: NF17173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17173_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 12 - 704
Target Start/End: Original strand, 33904483 - 33905175
Alignment:
| Q |
12 |
cagcacagacagatttgttaggtaaaatgttggtttagccgtcctagtcgcataatcgagcacatctatttgatgtagcaagcatagctaagaagttaaa |
111 |
Q |
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| T |
33904483 |
cagcacagacagatttgttaggtaaaatgttggtttaaccgtcctagtcgcataattgagcacatctatttgatttagcaagcatagctaagaagttaaa |
33904582 |
T |
|
| Q |
112 |
cctgtgattttactaacatcactaaagaaaataaaatagttttgtctagtaaattaactaccttcaacctctatatgtagcattcaattctatattacta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904583 |
cctgtgattttactaacatcactaaagaaaataaaatagttttgtctagtaaattaactaccttcaacctctatatgtagcattcaattctatattacta |
33904682 |
T |
|
| Q |
212 |
tgtaaacaaaaaatactattaactggattattttctgaattgttgttactcttctgatcctcactttaagagaaattctgttctcccatgcttccttggg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904683 |
tgtaaacaaaaaatactattaactggattattttctgaattgttgttactcttctgatcctcactttaagagaaattctgttctcccatgcttccttggg |
33904782 |
T |
|
| Q |
312 |
tacgttacatatacatacaagggctaaagtgttcttaattttacttgaaattttgcatgtaacatgttttttaacttaaaaaatcattaattgtgctcaa |
411 |
Q |
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| T |
33904783 |
ttcgttacatatacatacaagggctaaagtgttcttaattttacttgaaattttgcatgtaacatgttttttaacttaaaaaatcattaattgtgctcaa |
33904882 |
T |
|
| Q |
412 |
agtgggtttttctcatgcacagggtggttatgctaggcaagaactattttatcttctgaaagaagaaaaagatgtacatttttcatttggaagtgtacag |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904883 |
agtgggtttttctcatgcacagggtggttatgctaggcaagaactattttatcttctgaaagaagaaaaagatgtacatttttcatttggaagtgtacag |
33904982 |
T |
|
| Q |
512 |
aaaggtggagtgaggaatgcaacaaacggcatgcgatcttcgaaattctgtctcaacatagctggcgacacgccatcatcaaatcgcttattcgatgcaa |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904983 |
aaaggtggagtgaggaatgcaacaaacggcatgcgatcttcgaaattctgtctcaacatagctggcgacacgccatcatcaaatcgcttattcgatgcaa |
33905082 |
T |
|
| Q |
612 |
ttgcaagtcactgtgttcctgtcataatcagtgatgaaattgagcttccatatgaggatgttctcgactactccaagttctgcgtatttgttc |
704 |
Q |
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| T |
33905083 |
ttgcaagtcactgtgttcctgtcataatcagtgatgaaattgagcttccatatgaggatgttctcgactactccaagttctgcgtatttgttc |
33905175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 431 - 704
Target Start/End: Complemental strand, 9326697 - 9326424
Alignment:
| Q |
431 |
cagggtggttatgctaggcaagaactattttatcttctgaaagaagaaaaagatgtacatttttcatttggaagtgtacagaaaggtggagtgaggaatg |
530 |
Q |
| |
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||||| ||||||| ||||||||||||| |||| | ||||| | ||||| ||||||||||||||||||||||| | || |||| |||| | | ||| | |
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| T |
9326697 |
cagggaggttatgtgaggcaagaactatattattctttgaaaaatgaaaaggatgtacatttttcatttggaagcattcaaaaagatggaatcaagaaag |
9326598 |
T |
|
| Q |
531 |
caacaaacggcatgcgatcttcgaaattctgtctcaacatagctggcgacacgccatcatcaaatcgcttattcgatgcaattgcaagtcactgtgttcc |
630 |
Q |
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||||| | || ||||| | |||||||| || || |||||||| |||||||| || |||||||| ||||| ||||| |||||||| ||||| ||||| || |
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| T |
9326597 |
caacagaaggaatgcgtttgtcgaaattttgcctaaacatagcaggcgacacaccttcatcaaaccgcttgttcgacgcaattgctagtcattgtgtccc |
9326498 |
T |
|
| Q |
631 |
tgtcataatcagtgatgaaattgagcttccatatgaggatgttctcgactactccaagttctgcgtatttgttc |
704 |
Q |
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||| || |||||||||||||||||||| || | |||||| | |||||||||||| |||||||| ||||||||| |
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| T |
9326497 |
tgtgatcatcagtgatgaaattgagctaccgttcgaggatatcctcgactactccgagttctgcatatttgttc |
9326424 |
T |
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