View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17173_low_3 (Length: 388)
Name: NF17173_low_3
Description: NF17173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17173_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 33635396 - 33635063
Alignment:
| Q |
16 |
gaaatcatggaccctattcaacaaacaaaagaaaaatggaagggcaaagccaaaacagaagtggtaggatgcaaagctgaacaagtatggccacttttgg |
115 |
Q |
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| T |
33635396 |
gaaatcatggaccctattcaacaaacaaaagaaaaatggaagggcaaagccaaaacagaagtggtaggatgcaaagctgaacaagtatggccacttttgg |
33635297 |
T |
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| Q |
116 |
aggannnnnnnggccttgacaaatggtttccaactctctctacatgcattccaattgaaggaatatccggcaaacccggttgtgtccgattttgtgccgg |
215 |
Q |
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| T |
33635296 |
aggatttttttggccttgacaaatggtttccaactctctctacatgcattccaattgaaggaatatccggcaaacccggttgtgtccgattttgtgccgg |
33635197 |
T |
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| Q |
216 |
tttcaagactcctgtggatgaagatggcaaacaatctttgaattggacaaagcagaaacttctttcaattgatccaattcaaagggtgtttacctatgca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33635196 |
tttcaagactcctgtggatgaagatggcaaacaatctttgaattggacaaagcagaaacttctttcaattaatccaattcaaagggtgtttacctatgca |
33635097 |
T |
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| Q |
316 |
attattgatggaaatgttggattttattcctatg |
349 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33635096 |
attattgatggaaatgttggattttattcctatg |
33635063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 33650544 - 33650211
Alignment:
| Q |
16 |
gaaatcatggaccctattcaacaaacaaaagaaaaatggaagggcaaagccaaaacagaagtggtaggatgcaaagctgaacaagtatggccacttttgg |
115 |
Q |
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||||||||| || |||||||||||||||||||||||||| | ||||| |||||||| ||| | |||||||||||||| || ||||||||||| || |||| |
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| T |
33650544 |
gaaatcatgaacactattcaacaaacaaaagaaaaatggcaaggcaaggccaaaactgaattagtaggatgcaaagcagaccaagtatggcctctcttgg |
33650445 |
T |
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| Q |
116 |
aggannnnnnnggccttgacaaatggtttccaactctctctacatgcattccaattgaaggaatatccggcaaacccggttgtgtccgattttgtgccgg |
215 |
Q |
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| || || ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33650444 |
aagatttttttggtcttgataaatggtttccaactctctcttattgcattccagttgaaggaatatccggcaaacccggttgtgtccgattctgtgccgg |
33650345 |
T |
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| Q |
216 |
tttcaagactcctgtggatgaagatggcaaacaatctttgaattggacaaagcagaaacttctttcaattgatccaattcaaagggtgtttacctatgca |
315 |
Q |
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|||||||||||| || ||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33650344 |
tttcaagactccagttgataaacatggcaaacaaaacttgaattggactaagcagaaacttctttcaattgatccaattcaaagggtgtttagctatgca |
33650245 |
T |
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| Q |
316 |
attattgatggaaatgttggattttattcctatg |
349 |
Q |
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||| |||||||||||||||||||| ||||||||| |
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| T |
33650244 |
attgttgatggaaatgttggatttcattcctatg |
33650211 |
T |
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