View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17173_low_5 (Length: 253)
Name: NF17173_low_5
Description: NF17173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17173_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 6983069 - 6983276
Alignment:
| Q |
19 |
ttttgtgttgcggaaaaatggaaaaccaatagtacaagcatgtgtaggatagttgtgcttgagtggccaaaaattgcgaagtgaataaactacccaaaag |
118 |
Q |
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| T |
6983069 |
ttttgtgttgcggaaaaatggaaaaccaatagtacaagcatgtgtaggatagttgtgcttgagtggccaaaaattgcaaagtgaataaactatccaaaag |
6983168 |
T |
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| Q |
119 |
taaaattggcttgtataaaactatagcaatgtagagtgtattnnnnnnnntaccatttttctttatttttagtattttatgatattaaatgtaaatgtga |
218 |
Q |
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| T |
6983169 |
taaaattggcttgtataaaactatagcaatgtagagtgtattaaaaaaaataccatttttctttatttttagtattttatgatattaaatgtgaatgtga |
6983268 |
T |
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| Q |
219 |
tgagctta |
226 |
Q |
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|||||||| |
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| T |
6983269 |
tgagctta |
6983276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 6971565 - 6971667
Alignment:
| Q |
46 |
aatagtacaagcatgtgtaggatagttgtgcttgagtggccaaaaattgcgaagtgaataaa-ctacccaaaagtaaaattggcttgtataaaactatag |
144 |
Q |
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| T |
6971565 |
aatagtgcaaacatgtgcaggctagttgtgcttgagtaggtaaaaattacaaaatgaaaaaaactacccaaaagttaaattggcttgtataaaaaaatag |
6971664 |
T |
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| Q |
145 |
caa |
147 |
Q |
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||| |
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| T |
6971665 |
caa |
6971667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 138
Target Start/End: Original strand, 5730659 - 5730689
Alignment:
| Q |
108 |
ctacccaaaagtaaaattggcttgtataaaa |
138 |
Q |
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| T |
5730659 |
ctacccaaaagtaaaattggcttgtataaaa |
5730689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 138
Target Start/End: Original strand, 18654429 - 18654459
Alignment:
| Q |
108 |
ctacccaaaagtaaaattggcttgtataaaa |
138 |
Q |
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| T |
18654429 |
ctacccaaaagtaaaattggcttgtataaaa |
18654459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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