View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17174_low_1 (Length: 694)
Name: NF17174_low_1
Description: NF17174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17174_low_1 |
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| [»] scaffold0007 (4 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 72 - 408
Target Start/End: Complemental strand, 184639 - 184306
Alignment:
| Q |
72 |
taatccatgtcgactccgattgtaatctttcttatagtaagttacaaaattctcttgcagaaatgcatggtgatttaatgaatgtttttaaaagaataga |
171 |
Q |
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| T |
184639 |
taatccatgtcgactccgattgtaatctttcttatagtgagttacaaaattctcttgcagaaatgcatggcgatttgatgaatgtttttaaaagaataga |
184540 |
T |
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| Q |
172 |
cacccaaaagaaatttgttctcaagttggaagctgaacatttaaaacttaaaaaatatttagaatccttgaaaaatgatatcatgcattcatagtaaaag |
271 |
Q |
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| T |
184539 |
cacccaaaagaaatttgttctcaagttggaagctgaacatttaaaacttaaaaaatatttagaatccttg-aaaatg--atcatgcatccatagtaaaag |
184443 |
T |
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| Q |
272 |
agcatattgtaaatccttcaactgagtcatttaaagttgatccaccaaagtagcttaattggatgagttttgctagttatgaagtttgtcctagtctata |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
184442 |
agcatattgtaaatccttcaactgagtcatttaaagttgatccaccaaagtagcttaattggatgagttttgctagttatgaagtttgtcctagtctata |
184343 |
T |
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| Q |
372 |
tgaagagattaagtatctaaaaagtaaattagaacaa |
408 |
Q |
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| T |
184342 |
tgaagagattaagtatctaaaaagtaaattagaacaa |
184306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 477 - 684
Target Start/End: Complemental strand, 181591 - 181384
Alignment:
| Q |
477 |
aacttcatcattgatcaaatcattgtgttttttcatgttagaattttcattgtttaaggtgtaggtatgattgagattggattggcattgtagtagttaa |
576 |
Q |
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| T |
181591 |
aacttcatcattgatcaaatcattgtgttttttcatgttagaatttttattgtttaaggtgtaggtatgattgagattggattggctttgtagtagttaa |
181492 |
T |
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| Q |
577 |
gtgtacaaaacttaattgttaaacattgattcaatagtaaattgtttgttcaacgttgaattcttgtgtgtaaatattgttcacattagttatcatttgt |
676 |
Q |
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| T |
181491 |
gtatacaaatcttaattgttaaacattgattcaatagtaaattgtttcttcaacgttgaattcttgtgtgtaaacattgttcacattagttatcatttgt |
181392 |
T |
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| Q |
677 |
tgcctatg |
684 |
Q |
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|||||||| |
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| T |
181391 |
tgcctatg |
181384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 403 - 473
Target Start/End: Complemental strand, 184010 - 183945
Alignment:
| Q |
403 |
gaacaacattctaagaggcatcaaacaagagatcagtaagatctaagtatcataattggaattaacttgtt |
473 |
Q |
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| T |
184010 |
gaacaacattctaagaggcatcaaacaagaga-----aagatctaagtatcataattggaattaacttgtt |
183945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 185104 - 185056
Alignment:
| Q |
18 |
tccatgaggatagaaaatacgttaatcaatagaaaatcaacatacttac |
66 |
Q |
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| T |
185104 |
tccatgaggatagaaaatacgttaatcaatcgaaaatcaacacacttac |
185056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 22726347 - 22726410
Alignment:
| Q |
82 |
cgactccgattgtaatctttcttatagtaagttacaaaattctcttgcagaaatgcatggtgat |
145 |
Q |
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| T |
22726347 |
cgactccgattataatccttcttatagtgaattacaaaattatcttgaagaaatgcatggtgat |
22726410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 29953121 - 29953069
Alignment:
| Q |
331 |
tggatgagttttgctagttatgaagtttgtcctagtctatatgaagagattaa |
383 |
Q |
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| T |
29953121 |
tggatgaattttgctagttgtaaagtttgtcatagtctatatgaagagattaa |
29953069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 6165180 - 6165105
Alignment:
| Q |
332 |
ggatgagttttgctagttatgaagtttgtcctagtctatatgaagagattaagtatctaaaaagtaaattagaaca |
407 |
Q |
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| T |
6165180 |
ggatgaattttgctagttgtgaagtttgtcctactctacatgaagagatcaaatctctaaaatttaaactagaaca |
6165105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 6165363 - 6165296
Alignment:
| Q |
115 |
acaaaattctcttgcagaaatgcatggtgatttaatgaatgtttttaaaagaatagacacccaaaaga |
182 |
Q |
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| T |
6165363 |
acaaaatgctcttgtagaaatgcatggtgatgcaatgaatgcttttgaaagaatatgcgcccaaaaga |
6165296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 9649486 - 9649406
Alignment:
| Q |
328 |
aattggatgagttttgctagttatgaagtttgtcctagtctatatgaagagattaagtatctaaaaagtaaattagaacaa |
408 |
Q |
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| T |
9649486 |
aattggatgaattttgttagttgcgaaacttgtcataatttacatgaagagattaagtctctaacacgtaaattagaacaa |
9649406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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