View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17174_low_2 (Length: 576)
Name: NF17174_low_2
Description: NF17174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17174_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Complemental strand, 6330030 - 6329477
Alignment:
| Q |
18 |
ctcaccagcatatgtctcaccatgaaatatcctcttggagatggaaaggttggagttgttagggcagatcttgagatggctaagaagtgttacgaaatgc |
117 |
Q |
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| T |
6330030 |
ctcaccagcatatgtctcaccatgaaatatcctcttggagatggaaaggttggagttgttagggcagatcttgagatggctaagaagtgttacgaaatgc |
6329931 |
T |
|
| Q |
118 |
gtccttgtactgtttaggttttaattttcaataaccatgtaaaaaagtgtcttagttttaagtatgtagtgtctctaatctctataatgagtgacataaa |
217 |
Q |
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| T |
6329930 |
gtccttgtactgtttaggttttaattttcaataaccatgtaaaaaagtgtcttagttttaagtatgtaatgtctctaatctctataatgagtgacataaa |
6329831 |
T |
|
| Q |
218 |
tgttttggtacgtatgtctagtagtaactattgagaagcatcattgttgatcaatttcaatcagcacttgtgttttgttgatctagggctcatatttgtt |
317 |
Q |
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| T |
6329830 |
tgttttggtacgtatgtctagtagtaactattgagaagcatctttgttgatcaatttcaatcagcacttgtgttttgttgatctagggctcatatttgtt |
6329731 |
T |
|
| Q |
318 |
gtctttactgtgtcatcatgaactttaaaaattggagtgatgctctgccatgaaccaaattaaattgccaaagtaaaagaaaaatcacaatgctttcatt |
417 |
Q |
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| T |
6329730 |
gtctttactgtgtcatcatgaactttaaaaattggagtgatgctctgccatgaaccaaattaaattgccaaagtaaaagaaaaatcacaatgctttcatt |
6329631 |
T |
|
| Q |
418 |
aaaagccaaacttagtagtaacccataatcataaactaaccaattggcatctcttgccaaaagaggaagaggtagaagagaataataaactgaaatcacg |
517 |
Q |
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| T |
6329630 |
aaaagccaaacttagtagtaacccataatcataaactaaccaattggcatctcttgccaaaagaggaagaggtagaagagaataataaactgaaatcacg |
6329531 |
T |
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| Q |
518 |
agtataagattgtaacttcccaagagatattccatccacaagccctttgcttct |
571 |
Q |
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| T |
6329530 |
agtataagattgtaacttcccaagagatattccatccacaagcccattgattct |
6329477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 6327024 - 6326937
Alignment:
| Q |
34 |
tcaccatgaaatatcctcttggagatggaaaggttggagttgttagggcagatcttgagatggctaagaagtgttacgaaatgcgtcc |
121 |
Q |
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| T |
6327024 |
tcaccatagaatatcctgttggagatggaaaggtcggtgttgtcgaggcagacctcgagatggctaagaagtgtcacgaaatgtgtcc |
6326937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 6310012 - 6309936
Alignment:
| Q |
33 |
ctcaccatgaaatatcctcttggagatggaaaggttggagttgttagggcagatcttgagatggctaagaagtgtta |
109 |
Q |
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| T |
6310012 |
ctcacaatgaaatatcctattggagatggaatggtcggacttgtcaaggcagacctcgagatggcgaaaaagtgtta |
6309936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 394
Target Start/End: Original strand, 49072686 - 49072747
Alignment:
| Q |
333 |
tcatgaactttaaaaattggagtgatgctctgccatgaaccaaattaaattgccaaagtaaa |
394 |
Q |
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|||| ||| ||||||| |||||||||||||| ||||| ||||||||| |||| |||||||| |
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| T |
49072686 |
tcataaaccttaaaaagtggagtgatgctctttcatgagccaaattaatttgcaaaagtaaa |
49072747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 39832716 - 39832645
Alignment:
| Q |
40 |
tgaaatatcctcttggagatggaaaggttggagttgttagggcagatcttgagatggctaagaagtgttacga |
112 |
Q |
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| T |
39832716 |
tgaaatatcccgttggaaatggaaaggt-ggtgttgtcgaggcagaccttgagatggctaagaagtgtcacga |
39832645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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