View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17174_low_3 (Length: 547)
Name: NF17174_low_3
Description: NF17174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17174_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 535
Target Start/End: Original strand, 53792753 - 53793274
Alignment:
| Q |
15 |
tttgtttcctgttcctgtctttggagtttagtacattggag--------ggattgttacttgaatttaagtttttgactgcttgttttaatattgtgaat |
106 |
Q |
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| T |
53792753 |
tttgtttcctgttcctgtctttggagtttagaacattggagggagggagggattgttacttgaatttaagtttttgactgcttgttttaatattgtgaat |
53792852 |
T |
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| Q |
107 |
ggaaattcggttggcagaatggattatggcaagcacctgtaattggtgatgaagaaccaaatgttcctatgtggaatcctgtactgttcaaacttccatc |
206 |
Q |
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| T |
53792853 |
ggaaattcggttggcagaatggaatatggcaagcacctgtaattggtgatgaagaaccaaatgttcctatgtggaatcctgtactgttcaaacttccatc |
53792952 |
T |
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| Q |
207 |
aaatgtgttactcttgttctacaaaataggccaagattttcaaaagtaatgtttctatccttg-----catttttcatatatgtatgcannnnnnnnnnn |
301 |
Q |
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| T |
53792953 |
aaatgtgttactcttgttctacaaaataggccaagattttcaaaagtaatatttctatccttgcatttcatttttcatatatgtatgca----------- |
53793041 |
T |
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| Q |
302 |
nnnnnnnnncgctcgcgcgcgcgtattttgcaatctatggtagggaggtgcttttgaattaatgtgattgaggattcaatatgaacctaaagaaattggc |
401 |
Q |
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| T |
53793042 |
-tgtgtgtgcgctcgcgcgcgtgtattttgcaatctatggtagggaggtgcttttgaattaatgcaattgaggattcaatatgaacctaaagaaattggc |
53793140 |
T |
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| Q |
402 |
ttattttattttagatggagtggatttataaaacgctcatatgataaaggaattacctggacagaaagagaacaacttccacctggtatattaggaccta |
501 |
Q |
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| T |
53793141 |
ttattttattctagatggagtggatttataaaacgctcatatgataaaggaattacctggacagaaagagaacaacttccacctggtatattaggaccta |
53793240 |
T |
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| Q |
502 |
taaagaataaggtataacaaaaaccacacagaat |
535 |
Q |
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| T |
53793241 |
taaagaataaggtataacaaaatccacacagaat |
53793274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 409 - 515
Target Start/End: Original strand, 53784275 - 53784381
Alignment:
| Q |
409 |
attttagatggagtggatttataaaacgctcatatgataaaggaattacctggacagaaagagaacaacttccacctggtatattaggacctataaagaa |
508 |
Q |
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| T |
53784275 |
atttcagatggagtggattcgtcaaacgctcctatgataaaggaaatacttggacagaaagagagcaacttcctcctggtatattaggacctataaagaa |
53784374 |
T |
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| Q |
509 |
taaggta |
515 |
Q |
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| T |
53784375 |
taaggta |
53784381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 53783435 - 53783573
Alignment:
| Q |
122 |
agaatggattatggcaagcacctgtaattggtgatgaagaaccaaatgttcctatgtggaatcctgtactgttcaaacttccatcaaatgtgttactctt |
221 |
Q |
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| T |
53783435 |
agaatggaagatgggaatcacctgtaattgctgatgaacaaccaaatgttcctatgtggaatcctgtactattcaaacttccatcagatgagctacttct |
53783534 |
T |
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| Q |
222 |
gttctacaaaataggccaagattttcaaaagtaatgttt |
260 |
Q |
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| T |
53783535 |
attttacaagataggccaagaagttcaaaagtaaagttt |
53783573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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