View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17174_low_4 (Length: 321)

Name: NF17174_low_4
Description: NF17174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17174_low_4
NF17174_low_4
[»] chr7 (4 HSPs)
chr7 (6-308)||(19890814-19891116)
chr7 (9-284)||(29463673-29463948)
chr7 (26-284)||(19845882-19846140)
chr7 (30-75)||(32554539-32554584)
[»] chr4 (3 HSPs)
chr4 (9-281)||(49464323-49464595)
chr4 (29-160)||(8349993-8350124)
chr4 (27-139)||(41241025-41241137)
[»] chr8 (3 HSPs)
chr8 (9-284)||(1094036-1094311)
chr8 (29-163)||(25224183-25224317)
chr8 (28-163)||(26170959-26171094)
[»] chr1 (3 HSPs)
chr1 (24-145)||(33771307-33771428)
chr1 (11-145)||(33768455-33768589)
chr1 (12-145)||(33761862-33761995)
[»] chr2 (1 HSPs)
chr2 (29-144)||(28735352-28735467)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 308
Target Start/End: Complemental strand, 19891116 - 19890814
Alignment:
Q  6 acattgacccatttatcctgatgaagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctaccatcagtatgtttggcagtgccca 105  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  19891116 acattgacccatttatccccatgaagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctagtatcggtatgtttggcagtgccca 19891017  T
Q  106 tagttaattcaggttgaggacatggtggatagtaatgacattgaataaagagtccttcacaacaattcaactctttgagataatcacgatcaagttctag 205  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  19891016 tagttaattcaggttcaggacatgctggatagtaatgaccttgaataaagagtccttcacaacaatttaactctttgaggtaatcacgatcaagtcctag 19890917  T
Q  206 tgcctccgacaataactcaaagattatgaaacccaaatcccttattttttgggaatatttaatcacactatctctgcaaaacatgtaagaaacccaaatc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19890916 tgcctccgacaataactcaaagattatgaaacccaaatcccttattttttgggaatatttaatcacactatctctgcaaaacatgtaagaaacccaaatc 19890817  T
Q  306 cct 308  Q
    |||    
T  19890816 cct 19890814  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 29463948 - 29463673
Alignment:
Q  9 ttgacccatttatcctgatgaagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctaccatcagtatgtttggcagtgcccatag 108  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||   ||  | ||||||||    
T  29463948 ttgacccatttatcttcatgaagaacttgaagaccaccaagttggtcttgtagaagtaatgtcatgaaggtactatcagtatgcgcggtcgagcccatag 29463849  T
Q  109 ttaattcaggttgaggacatggtggatagtaatgacattgaataaagagtccttcacaacaattcaactctttgagataatcacgatcaagttctagtgc 208  Q
    ||||||||||||  ||||||| ||||||| | ||||    | ||||||||||||||  ||||   |||||||| || |||  | | | |||| |||||||    
T  29463848 ttaattcaggttcgggacatgttggatagaagtgacccaaagtaaagagtccttcagcacaaccaaactcttttaggtaagaagggttaagtcctagtgc 29463749  T
Q  209 ctccgacaataactcaaagattatgaaacccaaatcccttattttttgggaatatttaatcacactatctctgcaa 284  Q
    ||| |||||||||||||||||| |||||||||||| | |||||||||| ||||||| ||||||| |||||||||||    
T  29463748 ctctgacaataactcaaagattgtgaaacccaaattctttattttttgtgaatattcaatcacaatatctctgcaa 29463673  T

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Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 26 - 284
Target Start/End: Complemental strand, 19846140 - 19845882
Alignment:
Q  26 atgaagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctaccatcagtatgtttggcagtgcccatagttaattcaggttgagga 125  Q
    ||||||||||| ||||||||||| ||| || |||| |||||| || |||||| ||||||||||||||||  ||   ||||||||||||||||||| |||     
T  19846140 atgaagaacttcaagaccaccaatttggtcctgtaaaagtaaggtcatgaagttaccatcagtatgttttccaacacccatagttaattcaggttcaggg 19846041  T
Q  126 catggtggatagtaatgacattgaataaagagtccttcacaacaattcaactctttgagataatcacgatcaagttctagtgcctccgacaataactcaa 225  Q
    ||||| ||| |||| ||||    |||| ||| |||||||  ||| ||||||||||| |  |||  | |||||||| ||| |||||| ||||| |||||||    
T  19846040 catggcggaaagtagtgacccataatatagattccttcagcacacttcaactcttttaagtaagaaggatcaagtcctactgcctctgacaacaactcaa 19845941  T
Q  226 agattatgaaacccaaatcccttattttttgggaatatttaatcacactatctctgcaa 284  Q
    ||||| ||||||| ||||| |||||||| || ||||||| ||||||| |||||||||||    
T  19845940 agattctgaaacctaaatcacttattttctgtgaatattcaatcacaatatctctgcaa 19845882  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 32554539 - 32554584
Alignment:
Q  30 agaacttgaagaccaccaagttgatcttgtagaagtaatgttatga 75  Q
    ||||||||||||||||||||||| ||||| ||||||| ||| ||||    
T  32554539 agaacttgaagaccaccaagttggtcttggagaagtagtgtcatga 32554584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 49464323 - 49464595
Alignment:
Q  9 ttgacccatttatcctgatgaagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctaccatcagtatgtttggcagtgcccatag 108  Q
    ||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||| || | |||||||||||    
T  49464323 ttgacccatttatccttgtgaagaacttgaagaccaccaagttggtcttgtagaagtaatgtcatgaagttactatcagtatgctttgtagtgcccatag 49464422  T
Q  109 ttaattcaggttgaggacatggtggatagtaatgacattgaataaagagtccttcacaacaattcaactctttgagataatcacgatcaagttctagtgc 208  Q
    |||| ||||||| ||| || ||||||||| | ||||    ||||||||||||||||  |||||||||||||||||| |||  |   | |||| |||||||    
T  49464423 ttaactcaggttcagggcacggtggatagcagtgacccaaaataaagagtccttcagcacaattcaactctttgaggtaagaagagttaagtcctagtgc 49464522  T
Q  209 ctccgacaataactcaaagattatgaaacccaaatcccttattttttgggaatatttaatcacactatctctg 281  Q
    ||| ||||| |||||||||||| |||||||||| ||| ||||||| || ||||||| ||||||| ||||||||    
T  49464523 ctctgacaacaactcaaagattgtgaaacccaactcctttattttctgtgaatattcaatcacaatatctctg 49464595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 8350124 - 8349993
Alignment:
Q  29 aagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctaccatcagtatgtttggcagtgcccatagttaattcaggttgaggacat 128  Q
    |||||||||||||||||| | ||| |||||||||| || ||| |||||   |  |||||| |||| ||  || ||||| ||||||||||||| |||||||    
T  8350124 aagaacttgaagaccacccaattgttcttgtagaactattgtcatgaaagaaggatcagtgtgttcggacgtacccatggttaattcaggttcaggacat 8350025  T
Q  129 ggtggatagtaatgacattgaataaagagtcc 160  Q
    |||||||| ||||||| |||||| || |||||    
T  8350024 ggtggataataatgaccttgaatgaaaagtcc 8349993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 41241137 - 41241025
Alignment:
Q  27 tgaagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctaccatcagtatgtttggcagtgcccatagttaattcaggttgaggac 126  Q
    |||||||||||||||||  | | ||||| ||| |||||||  || ||||||  || ||| || ||||| ||| | |||||||||||||| |||| ||| |    
T  41241137 tgaagaacttgaagaccctctatttgattttgaagaagtatcgtcatgaaggcacaatcggtgtgttttgcaattcccatagttaattctggttcagggc 41241038  T
Q  127 atggtggatagta 139  Q
    || ||||||||||    
T  41241037 attgtggatagta 41241025  T

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Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 1094311 - 1094036
Alignment:
Q  9 ttgacccatttatcctgatgaagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctaccatcagtatgtttggcagtgcccatag 108  Q
    |||||||||||||| | |||||||||||| |||||||||||||| ||||||||||||||||| |||||  | | ||||||||| ||||  | ||||||||    
T  1094311 ttgacccatttatcttcatgaagaacttgtagaccaccaagttggtcttgtagaagtaatgtcatgaaagtgctatcagtatgcttggtcgagcccatag 1094212  T
Q  109 ttaattcaggttgaggacatggtggatagtaatgacattgaataaagagtccttcacaacaattcaactctttgagataatcacgatcaagttctagtgc 208  Q
    |||||||||||| ||| |||||||||||| | ||||    | |||| ||||||||   ||||   |||||||| || |||  | | | || | |||||||    
T  1094211 ttaattcaggttcagggcatggtggatagaagtgacccaaagtaaatagtccttcggcacaaccaaactctttaaggtaagaagggttaaatcctagtgc 1094112  T
Q  209 ctccgacaataactcaaagattatgaaacccaaatcccttattttttgggaatatttaatcacactatctctgcaa 284  Q
    ||| || || |||||||||||| |||||||||||| | |||||||||| ||||||| ||||||| |||||||||||    
T  1094111 ctctgataacaactcaaagattttgaaacccaaattctttattttttgtgaatattcaatcacaatatctctgcaa 1094036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 25224183 - 25224317
Alignment:
Q  29 aagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctaccatcagtatgtttggcagtgcccatagttaattcaggttgaggacat 128  Q
    |||||||||||||||||| | ||| |||||||||| || ||| || ||   |  |||||| ||||  |  || ||||| ||||||||||||| |||||||    
T  25224183 aagaacttgaagaccacccaattgttcttgtagaactattgtcataaaagaaggatcagtgtgttcagatgtacccatggttaattcaggttcaggacat 25224282  T
Q  129 ggtggatagtaatgacattgaataaagagtccttc 163  Q
    |||||||| ||||||| ||||||||| ||||||||    
T  25224283 ggtggataataatgaccttgaataaaaagtccttc 25224317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 26171094 - 26170959
Alignment:
Q  28 gaagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctaccatcagtatgtttggcagtgcccatagttaattcaggttgaggaca 127  Q
    ||||||||||||||||| | | ||| |||||||||| || ||| |||||   |  |||||| ||| |||  |  ||||| ||||||||||||| ||||||    
T  26171094 gaagaacttgaagaccagccaattgttcttgtagaactattgtcatgaaagcaggatcagtgtgtgtggacgcacccatggttaattcaggttcaggaca 26170995  T
Q  128 tggtggatagtaatgacattgaataaagagtccttc 163  Q
    ||||||||| ||||||| ||||||||| | ||||||    
T  26170994 tggtggataataatgaccttgaataaaaattccttc 26170959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 33771307 - 33771428
Alignment:
Q  24 tgatgaagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctaccatcagtatgtttggcagtgcccatagttaattcaggttgag 123  Q
    |||||||||||||||||||| ||||   | ||||||||||| | ||| ||||||  ||||||||| || || | ||  ||||||||||||||||||| ||    
T  33771307 tgatgaagaacttgaagaccgccaatacggtcttgtagaagaattgtcatgaagtcaccatcagtgtgatttgaagctcccatagttaattcaggttcag 33771406  T
Q  124 gacatggtggatagtaatgaca 145  Q
    ||||||| |||||||| |||||    
T  33771407 gacatggaggatagtagtgaca 33771428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 33768455 - 33768589
Alignment:
Q  11 gacccatttatcctgatgaagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctaccatcagtatgtttggcagtgcccatagtt 110  Q
    |||||||| || |||||||||||||||||||||||| |  || ||||||||||| | ||| |||||   |  ||| || || || | ||| |||||||||    
T  33768455 gacccattgattctgatgaagaacttgaagaccaccgatctggtcttgtagaagaattgtcatgaaatcaatatcggtgtgcttagaagttcccatagtt 33768554  T
Q  111 aattcaggttgaggacatggtggatagtaatgaca 145  Q
    ||||| |||| ||| ||||| |||||||| |||||    
T  33768555 aattcgggttcagggcatggaggatagtagtgaca 33768589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 33761862 - 33761995
Alignment:
Q  12 acccatttatcctgatgaagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctaccatcagtatgtttggcagtgcccatagtta 111  Q
    ||||||| || ||||||||||||||||| ||||||||  || ||||||||||| | ||| |||||   |  ||| || || || | ||| ||||||||||    
T  33761862 acccattgattctgatgaagaacttgaaaaccaccaatctggtcttgtagaagaattgtcatgaaatcaatatcggtgtgcttcgaagttcccatagtta 33761961  T
Q  112 attcaggttgaggacatggtggatagtaatgaca 145  Q
    |||| |||| ||| ||||  |||||||| |||||    
T  33761962 attcgggttcagggcatgcaggatagtagtgaca 33761995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 28735352 - 28735467
Alignment:
Q  29 aagaacttgaagaccaccaagttgatcttgtagaagtaatgttatgaagctaccatcagtatgtttggcagtgcccatagttaattcaggttgaggacat 128  Q
    ||||||||||||||||||||  || ||||| ||||| | ||| |  || |||||||||| ||||||||  || ||||| ||||| || |||| ||||||     
T  28735352 aagaacttgaagaccaccaatatggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaa 28735451  T
Q  129 ggtggatagtaatgac 144  Q
    |  |||||||||||||    
T  28735452 gcaggatagtaatgac 28735467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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