View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17175_low_2 (Length: 264)
Name: NF17175_low_2
Description: NF17175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17175_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 17136771 - 17136531
Alignment:
| Q |
15 |
ttcagtttgttgagatactgttgcgagataaaataaatctattagaatgagggcggaagagacacatgtacataaaatatagtgcttgattgtttgcagg |
114 |
Q |
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| T |
17136771 |
ttcagtttgttgagatactgttgcgagataaaataaatctattagaatgagggcggaagagacacatgtacgtaaaatatagtgcttgattgtttgcagg |
17136672 |
T |
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| Q |
115 |
gaagacttaccgattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggtggaaggaagt |
214 |
Q |
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| T |
17136671 |
gaagacttaccgattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggtggaaggaagt |
17136572 |
T |
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| Q |
215 |
cacactgtgcaaaacatttacgactcacttgacattcattt |
255 |
Q |
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| T |
17136571 |
cacactgtgcaaaacatttacgactcacttgacattcattt |
17136531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 105 - 255
Target Start/End: Original strand, 17347135 - 17347285
Alignment:
| Q |
105 |
tgtttgcagggaagacttaccgattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggt |
204 |
Q |
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| T |
17347135 |
tgtttgcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaagcttgttgaggt |
17347234 |
T |
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| Q |
205 |
ggaaggaagtcacactgtgcaaaacatttacgactcacttgacattcattt |
255 |
Q |
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| T |
17347235 |
ggaaggaagtcacactctgcaaaacacttatgactcacttgacattcattt |
17347285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 255
Target Start/End: Complemental strand, 37091287 - 37091158
Alignment:
| Q |
126 |
gattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggtggaaggaagtcacactgtgca |
225 |
Q |
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| T |
37091287 |
gattccggatatcaaatgttggactcacaacttccatcaatttcagaattcaaggtcataagatgaaactagttgaagtggaaggaatccacacactaca |
37091188 |
T |
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| Q |
226 |
aaacatttacgactcacttgacattcattt |
255 |
Q |
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| T |
37091187 |
aaacacttatgattcccttgatattcattt |
37091158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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