View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17176_high_1 (Length: 735)

Name: NF17176_high_1
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17176_high_1
NF17176_high_1
[»] chr7 (6 HSPs)
chr7 (125-722)||(353996-354593)
chr7 (432-722)||(10580686-10580970)
chr7 (445-679)||(10575299-10575532)
chr7 (1-60)||(353872-353931)
chr7 (319-369)||(10580612-10580662)
chr7 (604-676)||(39954885-39954957)
[»] chr3 (7 HSPs)
chr3 (445-680)||(21584633-21584867)
chr3 (446-676)||(25084951-25085180)
chr3 (446-676)||(24923500-24923729)
chr3 (446-676)||(24497299-24497528)
chr3 (446-673)||(24919929-24920155)
chr3 (445-676)||(24981958-24982188)
chr3 (506-676)||(31825597-31825766)
[»] chr8 (1 HSPs)
chr8 (445-680)||(14261068-14261302)
[»] chr4 (2 HSPs)
chr4 (446-680)||(22898466-22898699)
chr4 (446-680)||(22950134-22950367)
[»] chr2 (1 HSPs)
chr2 (446-680)||(41027485-41027718)
[»] chr1 (1 HSPs)
chr1 (1-30)||(24579067-24579096)


Alignment Details
Target: chr7 (Bit Score: 578; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 125 - 722
Target Start/End: Original strand, 353996 - 354593
Alignment:
Q  125 tgtgatgtttgtttttgaaggttaagtttgccactataacaaagaagcttgatcaaaagactcagaaactcggacccgcagttggttatgtctgatctgt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  353996 tgtgatgtttgtttttgaaggttaagtttgccactataacaaagaagcttgatcagaagactcagaaactcggacccgcagttggttatgtctgatctat 354095  T
Q  225 tgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtga 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354096 tgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtga 354195  T
Q  325 tcattgctggagcagtgttatggattcttcaacgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgt 424  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354196 tcattgctggagcagtgttatggattcttcaatgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgt 354295  T
Q  425 gtgtttgtaatgtctggtcaaggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagat 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354296 gtgtttgtaatgtctggtcaaggaaagggaggtgcaaagtgacatagcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagat 354395  T
Q  525 tggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctg 624  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354396 tggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctg 354495  T
Q  625 ttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaagaagatga 722  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354496 ttacttacactgagcatgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaagaagatga 354593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 432 - 722
Target Start/End: Original strand, 10580686 - 10580970
Alignment:
Q  432 taatgtctggtcaaggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgag 531  Q
    |||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10580686 taatgtctggtcaatgaaagggaggtgcaaagtgatattgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgag 10580785  T
Q  532 aagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttactta 631  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||    
T  10580786 aagagttggtgtgaagaggatcagtgg-tttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttactta 10580884  T
Q  632 cactgagcgtgcaaggaggaagactctgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaagaagatga 722  Q
    ||||||||     | |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  10580885 cactgagc-----atgaggaagactctgactgctatggatgttgtttatcagggaagaaccctctatggttttggtggatgaagaagatga 10580970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 445 - 679
Target Start/End: Original strand, 10575299 - 10575532
Alignment:
Q  445 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 544  Q
    ||||||||| ||||||||| ||||||||||||||||  | |  ||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||    
T  10575299 aggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtg 10575398  T
Q  545 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgca 644  Q
    || || ||||||||  || ||||||||||||| |||||| ||||||||||| |||||| ||||||  ||  | |||||||||||||||||||||| |||     
T  10575399 aaaagaatcagtgg-attgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttacttacactgagcatgcg 10575497  T
Q  645 aggaggaagactctgactgctatggatgttgttta 679  Q
    |||||||| ||| ||||||||||||||||||||||    
T  10575498 aggaggaaaactgtgactgctatggatgttgttta 10575532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 353872 - 353931
Alignment:
Q  1 gggaagagagaaagaaacatgtaagaacgaagaaagagtgaatcttttgctatttttatt 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  353872 gggaagagagaaagaaacatgtaagaacgaagaaagagtgaatcttttgctatttttatt 353931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 10580612 - 10580662
Alignment:
Q  319 ttgtgatcattgctggagcagtgttatggattcttcaacgcataacaaatg 369  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  10580612 ttgttatcattgttggagcagtgtcatggattcttcaacgcataacaaatg 10580662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 604 - 676
Target Start/End: Complemental strand, 39954957 - 39954885
Alignment:
Q  604 agaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 676  Q
    |||||| |||| |||||||||||||||||||||||| ||| |||||||| ||| | || || |||||||||||    
T  39954957 agaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgt 39954885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 5e-61; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 445 - 680
Target Start/End: Complemental strand, 21584867 - 21584633
Alignment:
Q  445 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 544  Q
    ||||||||||||||||||| ||||  | || |||||| | | ||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||     
T  21584867 aggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattcgtcgattggcgagaagaggtggtgtt 21584768  T
Q  545 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgca 644  Q
    ||||| ||||||||||| | | |||||||||| |||||||||  | |||||||||||| |||||| |||| ||||||| ||||| |||||||||| ||||    
T  21584767 aagagaatcagtggtttgatt-tatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgtacactgagcatgca 21584669  T
Q  645 aggaggaagactctgactgctatggatgttgtttat 680  Q
    |||||||||||| |||||||||||||||||||||||    
T  21584668 aggaggaagactgtgactgctatggatgttgtttat 21584633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 446 - 676
Target Start/End: Original strand, 25084951 - 25085180
Alignment:
Q  446 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 545  Q
    |||||||||||||||||| | ||| | ||||||||| | | |||||| || || || || ||||| || |||||||||||||||||||||||||||||||    
T  25084951 ggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtga 25085050  T
Q  546 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 645  Q
    |||| |||||||| ||| || ||||| ||||  ||||| || |||||||| |||||| |||||| |||  ||||||| ||||| ||||||||||  ||||    
T  25085051 agagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgcaa 25085149  T
Q  646 ggaggaagactctgactgctatggatgttgt 676  Q
    ||||||||||| |||| || |||||||||||    
T  25085150 ggaggaagactgtgacagccatggatgttgt 25085180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 446 - 676
Target Start/End: Complemental strand, 24923729 - 24923500
Alignment:
Q  446 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 545  Q
    |||||||||||||||||| | ||| | ||||||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||| |    
T  24923729 ggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtta 24923630  T
Q  546 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 645  Q
    |||| |||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||||||  ||| |||||||||| || ||||||||||  ||||    
T  24923629 agagaatcagtgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacatacactgagcacgcaa 24923531  T
Q  646 ggaggaagactctgactgctatggatgttgt 676  Q
    ||||||||||  |||| || |||||||||||    
T  24923530 ggaggaagacagtgacagccatggatgttgt 24923500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 446 - 676
Target Start/End: Complemental strand, 24497528 - 24497299
Alignment:
Q  446 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 545  Q
    |||||||||||||||||| | ||| | ||||||||| | |  ||||| || || || || ||||| || |||||| ||||||| |||||||||||||| |    
T  24497528 ggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtta 24497429  T
Q  546 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 645  Q
    |||| |||||||| || | ||||||| ||||  ||||| || |||||||| |||||| | |||| |||  ||||||| ||||| ||||||||||  ||||    
T  24497428 agagaatcagtggattga-tctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacatacactgagcacgcaa 24497330  T
Q  646 ggaggaagactctgactgctatggatgttgt 676  Q
    ||||||||||| |||| || |||||||||||    
T  24497329 ggaggaagactgtgacagccatggatgttgt 24497299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 446 - 673
Target Start/End: Complemental strand, 24920155 - 24919929
Alignment:
Q  446 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 545  Q
    |||||||||||||||||| | ||| | || |||||| | | |||||| || || || || ||||| || |||||| ||||||| ||||||||||||||||    
T  24920155 ggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgcaattcgtcgattggcaagaagaggtggtgtga 24920056  T
Q  546 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 645  Q
    |||| ||||| || ||| |||||||| ||||  ||||| || |||||||| |||||  ||||||  ||| |||||||||| || ||||||||||  || |    
T  24920055 agagaatcagcgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacatacactgagcacgcta 24919957  T
Q  646 ggaggaagactctgactgctatggatgt 673  Q
    ||||||||||  |||| || ||||||||    
T  24919956 ggaggaagacagtgacagccatggatgt 24919929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 445 - 676
Target Start/End: Original strand, 24981958 - 24982188
Alignment:
Q  445 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 544  Q
    ||||||||||||||||||| | ||| | || |||||| | | |||||| || || || || ||||| || |||||| ||||||| ||||||||||||||     
T  24981958 aggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtt 24982057  T
Q  545 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgca 644  Q
    ||||| |||||||| ||| || ||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| ||||| ||||||||||  ||     
T  24982058 aagagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgct 24982156  T
Q  645 aggaggaagactctgactgctatggatgttgt 676  Q
    |||||||||||| | || || |||||||||||    
T  24982157 aggaggaagactgttaccgccatggatgttgt 24982188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 506 - 676
Target Start/End: Complemental strand, 31825766 - 31825597
Alignment:
Q  506 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 605  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||    
T  31825766 aagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtgg-tttgatctatgaagaaactagaggtgtcttgaagatcttcttggag 31825668  T
Q  606 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 676  Q
    ||||  ||  ||||||| || || ||||||||||  || |||||||||||  | || || |||||||||||    
T  31825667 aatgtcatccgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgt 31825597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 445 - 680
Target Start/End: Complemental strand, 14261302 - 14261068
Alignment:
Q  445 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 544  Q
    ||||||||||||||||||| |||||||||| || ||| | |  ||||| |||||||| |||||||||||||||||  |||| ||||||||||| ||||||    
T  14261302 aggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtg 14261203  T
Q  545 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgca 644  Q
    ||||| ||||| ||  || || ||||| ||||   | || |||||||||||||||||| |||||| |||  | ||||||||||| || ||||| | |||     
T  14261202 aagagaatcagcgg-gttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatgtgataagagatgctgttacgtatactgaacatgcg 14261104  T
Q  645 aggaggaagactctgactgctatggatgttgtttat 680  Q
    |||||||||||  | |||||||||||||||||||||    
T  14261103 aggaggaagacggttactgctatggatgttgtttat 14261068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 446 - 680
Target Start/End: Original strand, 22898466 - 22898699
Alignment:
Q  446 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 545  Q
    |||||||| || |||||| ||||||| ||||| ||| | |  ||||| || |||||||||||||||||||||||| |  | ||  | ||||| || ||||    
T  22898466 ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtga 22898565  T
Q  546 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 645  Q
    || | ||||||||||| | | |||||||| | | | || ||||||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || |    
T  22898566 agcgtatcagtggtttgatt-tatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgcta 22898664  T
Q  646 ggaggaagactctgactgctatggatgttgtttat 680  Q
    | ||||||||  | |||||||||||||| ||||||    
T  22898665 gaaggaagacggttactgctatggatgtggtttat 22898699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 446 - 680
Target Start/End: Original strand, 22950134 - 22950367
Alignment:
Q  446 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 545  Q
    |||||||| || |||||| ||||||| ||||| ||| | |  ||||| || |||||||||||||||||||||||| |  | ||  | ||||| || ||||    
T  22950134 ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtga 22950233  T
Q  546 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 645  Q
    || | ||||||||||| | | |||||||| | | | || ||||||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || |    
T  22950234 agcgtatcagtggtttgatt-tatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgcta 22950332  T
Q  646 ggaggaagactctgactgctatggatgttgtttat 680  Q
    | ||||||||  | |||||||||||||| ||||||    
T  22950333 gaaggaagacggttactgctatggatgtggtttat 22950367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 446 - 680
Target Start/End: Original strand, 41027485 - 41027718
Alignment:
Q  446 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 545  Q
    ||||||||||| |||||  |||| || ||||| ||| | | ||||||||||||||| || ||||| ||||||||| | |||||  | ||||| || ||||    
T  41027485 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacattcaaggaattacgaagcctgcgattcgtcgtttggcacgtagaggaggagtga 41027584  T
Q  546 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaa 645  Q
    || | || || ||||| | |||| || || | | | || ||||||||||| || ||| ||||||  ||| ||||||||||||||||||| ||||  || |    
T  41027585 agcgtataagcggtttga-tctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgcta 41027683  T
Q  646 ggaggaagactctgactgctatggatgttgtttat 680  Q
    |||| |||||| | |||||||||||||||||||||    
T  41027684 ggagaaagactgttactgctatggatgttgtttat 41027718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 24579067 - 24579096
Alignment:
Q  1 gggaagagagaaagaaacatgtaagaacga 30  Q
    ||||||||||||||||||||||||||||||    
T  24579067 gggaagagagaaagaaacatgtaagaacga 24579096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University