View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17176_high_17 (Length: 292)

Name: NF17176_high_17
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17176_high_17
NF17176_high_17
[»] chr6 (19 HSPs)
chr6 (18-292)||(33306700-33306971)
chr6 (218-289)||(33412170-33412238)
chr6 (218-292)||(33402828-33402899)
chr6 (19-72)||(33390504-33390557)
chr6 (246-292)||(33642422-33642468)
chr6 (19-64)||(33265321-33265366)
chr6 (19-64)||(33274465-33274510)
chr6 (19-76)||(33412345-33412402)
chr6 (19-64)||(33642213-33642258)
chr6 (218-292)||(33264863-33264934)
chr6 (218-292)||(33360293-33360364)
chr6 (218-288)||(33390290-33390357)
chr6 (19-72)||(33059986-33060039)
chr6 (19-76)||(33288002-33288059)
chr6 (19-188)||(33402938-33403095)
chr6 (218-292)||(33059777-33059848)
chr6 (218-288)||(33274010-33274077)
chr6 (19-58)||(9169303-9169342)
chr6 (219-288)||(31566925-31566990)
[»] scaffold1749 (1 HSPs)
scaffold1749 (19-64)||(585-630)
[»] scaffold0428 (1 HSPs)
scaffold0428 (19-64)||(9346-9391)
[»] chr2 (2 HSPs)
chr2 (19-64)||(17438285-17438330)
chr2 (248-292)||(17438650-17438694)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 33306971 - 33306700
Alignment:
Q  18 tgtggggagtatctctggttgggatctccgtgataagtaagaaatttgtagttttctttcnnnnnnngtagagaatataaggttaagagatgtcggacga 117  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  33306971 tgtggggagtatctctggttgggatctacgtgataagtaagtaatttgtagttttctttctttttt-gtagagaatataaggttaagagatgtcggacga 33306873  T
Q  118 gtccaggctagaaacaaaaagaatgcctattttttgtttgcctctagaataaatatttggagttcaaactaannnnnnnnnnnnnnnnnngtatgtaacg 217  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||    
T  33306872 gtccaggatagaaacaaaaagaatgcctattttttgtttgcctctagaataaatatttggagttcaaactaatttttctttttggtttttgtatgtaacg 33306773  T
Q  218 ataatgttattgaacaactttttgaactaatttcaggccacaagctggagtgattaaaaagattgttcaaaagat 292  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33306772 --aatgttattgaacaactttttgaactaatttcaggccacaagctggagtgattaaaaagattgttcaaaagat 33306700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 33412238 - 33412170
Alignment:
Q  218 ataatgttattgaacaactttttgaactaatttcaggccacaagctggagtgattaaaaagattgttcaaaa 289  Q
    ||||||||||||||||||||| ||||||   ||||||||||||||||||| |||||||||||||||||||||    
T  33412238 ataatgttattgaacaactttctgaact---ttcaggccacaagctggagagattaaaaagattgttcaaaa 33412170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 33402899 - 33402828
Alignment:
Q  218 ataatgttattgaacaactttttgaactaatttcaggccacaagctggagtgattaaaaagattgttcaaaagat 292  Q
    |||||||| ||||||||||||| |||||   ||||||||||||||||||| ||||||||||||||||||||||||    
T  33402899 ataatgtttttgaacaacttttggaact---ttcaggccacaagctggagagattaaaaagattgttcaaaagat 33402828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 33390557 - 33390504
Alignment:
Q  19 gtggggagtatctctggttgggatctccgtgataagtaagaaatttgtagtttt 72  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  33390557 gtggggagtatctctggttgggatctatgtgataagtaagaaatttatagtttt 33390504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 33642422 - 33642468
Alignment:
Q  246 aatttcaggccacaagctggagtgattaaaaagattgttcaaaagat 292  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||    
T  33642422 aatttcaggccacaagctgcagagattaaaaagattgttcaaaagat 33642468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 33265366 - 33265321
Alignment:
Q  19 gtggggagtatctctggttgggatctccgtgataagtaagaaattt 64  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||    
T  33265366 gtggggagtatctctggttgggatctacgtgataagtaagtaattt 33265321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 33274510 - 33274465
Alignment:
Q  19 gtggggagtatctctggttgggatctccgtgataagtaagaaattt 64  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||    
T  33274510 gtggggagtatctctggttgggatctacgtgataagtaagtaattt 33274465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 33412402 - 33412345
Alignment:
Q  19 gtggggagtatctctggttgggatctccgtgataagtaagaaatttgtagttttcttt 76  Q
    |||||||||||||||||||||||||| |||||||||||||  |||| | |||||||||    
T  33412402 gtggggagtatctctggttgggatctacgtgataagtaagttatttatggttttcttt 33412345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 33642213 - 33642258
Alignment:
Q  19 gtggggagtatctctggttgggatctccgtgataagtaagaaattt 64  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||    
T  33642213 gtggggagtatctctggttgggatctacgtgataagtaagtaattt 33642258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 33264934 - 33264863
Alignment:
Q  218 ataatgttattgaacaactttttgaactaatttcaggccacaagctggagtgattaaaaagattgttcaaaagat 292  Q
    ||||| |||||||| || |||||||||| |   |||||| |||||||||| ||||||||||||||||||||||||    
T  33264934 ataatattattgaataattttttgaactta---caggccgcaagctggagagattaaaaagattgttcaaaagat 33264863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 33360364 - 33360293
Alignment:
Q  218 ataatgttattgaacaactttttgaactaatttcaggccacaagctggagtgattaaaaagattgttcaaaagat 292  Q
    |||||||||||||||||||||||||||   ||||||||||| |||| |||  |||||| || |||||||||||||    
T  33360364 ataatgttattgaacaactttttgaac---tttcaggccactagctagagaaattaaagaggttgttcaaaagat 33360293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 33390357 - 33390290
Alignment:
Q  218 ataatgttattgaacaactttttgaactaatttcaggccacaagctggagtgattaaaaagattgttcaaa 288  Q
    ||||| |||||||||||| |||||||||   ||||||||||||| ||| | ||||||||||||||||||||    
T  33390357 ataattttattgaacaacattttgaact---ttcaggccacaagttggtgagattaaaaagattgttcaaa 33390290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 33060039 - 33059986
Alignment:
Q  19 gtggggagtatctctggttgggatctccgtgataagtaagaaatttgtagtttt 72  Q
    ||||||||||| |||||||||||||| |||||| |||||| ||||| |||||||    
T  33060039 gtggggagtatatctggttgggatctacgtgatgagtaagtaatttatagtttt 33059986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 33288059 - 33288002
Alignment:
Q  19 gtggggagtatctctggttgggatctccgtgataagtaagaaatttgtagttttcttt 76  Q
    |||||||||||| |||||||||||||  |||||||||||| ||||| |||||| ||||    
T  33288059 gtggggagtatcgctggttgggatctatgtgataagtaagtaatttatagtttacttt 33288002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 33403095 - 33402938
Alignment:
Q  19 gtggggagtatctctggttgggatctccgtgataagtaagaaatttgtagttttctttcnnnnnnngtagagaatataaggttaagagatgtcggacgag 118  Q
    ||||||||||| ||||||||||||||  |||||||||||| ||||| |||| || |||        ||||  |||||||||| ||||||||  | |||||    
T  33403095 gtggggagtatatctggttgggatctatgtgataagtaagtaatttatagtgtttttt------ttgtagtaaatataaggtgaagagatggtgcacgag 33403002  T
Q  119 tccaggctagaaacaaaaagaatgcctattttttgtttgcctctagaataaatatttggagttcaaacta 188  Q
    ||||||  ||||||  | ||      | |||||| ||||||||||||| |||||||||||||||||||||    
T  33403001 tccaggacagaaactcagag------tgttttttatttgcctctagaacaaatatttggagttcaaacta 33402938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 33059848 - 33059777
Alignment:
Q  218 ataatgttattgaacaactttttgaactaatttcaggccacaagctggagtgattaaaaagattgttcaaaagat 292  Q
    ||||||||| ||||||| ||||||||||   |||||||||| |||| |||  |||||| ||||||||||||||||    
T  33059848 ataatgttactgaacaattttttgaact---ttcaggccactagctagagaaattaaagagattgttcaaaagat 33059777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 33274077 - 33274010
Alignment:
Q  218 ataatgttattgaacaactttttgaactaatttcaggccacaagctggagtgattaaaaagattgttcaaa 288  Q
    ||||| |||||||| || |||||||||| |   |||||| |||||||||| ||||||||||||||||||||    
T  33274077 ataatattattgaaaaattttttgaactta---caggccgcaagctggagagattaaaaagattgttcaaa 33274010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 9169342 - 9169303
Alignment:
Q  19 gtggggagtatctctggttgggatctccgtgataagtaag 58  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  9169342 gtggggagtatctctggttgggacctacgtgataagtaag 9169303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 31566925 - 31566990
Alignment:
Q  219 taatgttattgaacaactttttgaactaatttcaggccacaagctggagtgattaaaaagattgttcaaa 288  Q
    |||||||||||||||||||||| ||||   |||||||||||| || ||| |||||||||||||| |||||    
T  31566925 taatgttattgaacaacttttt-aact---ttcaggccacaatcttgagagattaaaaagattgctcaaa 31566990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 630 - 585
Alignment:
Q  19 gtggggagtatctctggttgggatctccgtgataagtaagaaattt 64  Q
    |||||||||||| ||||||||||||| ||||||||||||| |||||    
T  630 gtggggagtatcgctggttgggatctacgtgataagtaagtaattt 585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 9391 - 9346
Alignment:
Q  19 gtggggagtatctctggttgggatctccgtgataagtaagaaattt 64  Q
    |||||||||||| ||||||||||||| ||||||||||||| |||||    
T  9391 gtggggagtatcgctggttgggatctacgtgataagtaagtaattt 9346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 17438285 - 17438330
Alignment:
Q  19 gtggggagtatctctggttgggatctccgtgataagtaagaaattt 64  Q
    |||||||||||| ||||||||||||| ||||||||||||| |||||    
T  17438285 gtggggagtatcgctggttgggatctacgtgataagtaagtaattt 17438330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 17438650 - 17438694
Alignment:
Q  248 tttcaggccacaagctggagtgattaaaaagattgttcaaaagat 292  Q
    |||||||||||||  || || ||||||||||||||||||||||||    
T  17438650 tttcaggccacaatgtgcagagattaaaaagattgttcaaaagat 17438694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University