View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17176_high_19 (Length: 289)
Name: NF17176_high_19
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17176_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 52590752 - 52590476
Alignment:
| Q |
1 |
caccacttaagttacccaaaaattcaaaatctatttcatcatgagcatcaccaagagaagatagctgcaacaatcataacaaat----attcagtaaaaa |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52590752 |
caccacttaagttacccaaaaattcaaaatctatttcatcatgagcatcaccaagagaagatagctgcaacaatcataacaaattaatattcagtaaaaa |
52590653 |
T |
|
| Q |
97 |
tatatttcatcaatttaattcatcttaaacatttcgattgaagattaaataataaaaacacatatttaatgaaagacacttacataatatgttgtgactg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52590652 |
tatatttcatcaatttaattcatcttaaacatttcgattgaagattaaataataaaaacacatatttaatgaaagacacttacataatatgttgtgactg |
52590553 |
T |
|
| Q |
197 |
tgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaat |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52590552 |
tgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaat |
52590476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 53492513 - 53492421
Alignment:
| Q |
174 |
acttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttgga |
266 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| || || ||||| || |||||||| |||||||| ||||| | ||| ||||||||||| |
|
|
| T |
53492513 |
acttacataataggcagtgacagtgccagcagagttgccaggaacaagtttaagttgcatatcaattttgccaaaaaggtattcatttttgga |
53492421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 53498827 - 53498735
Alignment:
| Q |
174 |
acttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttgga |
266 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| || || |||||||| | ||||| |||||||| ||||| ||||| ||||||||||| |
|
|
| T |
53498827 |
acttacataataggcagtgacagtgccagcagagtttcctggaacaagcttaatctgcatatcaattttgccaaataagtattcatttttgga |
53498735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 16941576 - 16941479
Alignment:
| Q |
175 |
cttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaa |
272 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||| | ||||| || ||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
16941576 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaa |
16941479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 17012241 - 17012144
Alignment:
| Q |
175 |
cttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaa |
272 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||| | ||||| || ||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
17012241 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaa |
17012144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 16942169 - 16942094
Alignment:
| Q |
1 |
caccacttaagttacccaaaaattcaaaatctatttcatcatgagcatcaccaagagaagatagctgcaacaatca |
76 |
Q |
| |
|
||||||| |||||||| | ||||||||| |||||||||||||||| | || |||||||||||||||| |||||| |
|
|
| T |
16942169 |
caccactcaagttaccaagaaattcaaagtctatttcatcatgagtagaccctagagaagatagctgcatcaatca |
16942094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 17012834 - 17012759
Alignment:
| Q |
1 |
caccacttaagttacccaaaaattcaaaatctatttcatcatgagcatcaccaagagaagatagctgcaacaatca |
76 |
Q |
| |
|
||||||| |||||||| | ||||||||| |||||||||||||||| | || |||||||||||||||| |||||| |
|
|
| T |
17012834 |
caccactcaagttaccaagaaattcaaagtctatttcatcatgagtagaccctagagaagatagctgcatcaatca |
17012759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 266
Target Start/End: Complemental strand, 37188474 - 37188383
Alignment:
| Q |
175 |
cttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttgga |
266 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||| || || ||||| || || ||||| |||||||| ||||| | ||| ||||||||||| |
|
|
| T |
37188474 |
cttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttgga |
37188383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 32708724 - 32708692
Alignment:
| Q |
12 |
ttacccaaaaattcaaaatctatttcatcatga |
44 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
32708724 |
ttacccaaaaactcaaaatctatttcatcatga |
32708692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University