View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17176_high_20 (Length: 262)
Name: NF17176_high_20
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17176_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 2794728 - 2794971
Alignment:
| Q |
18 |
aggatcgtggtccatcagctcacctattaggtgctgaaacttttcctaattccagtggacccttcctaacttctgtaagcagatatgagctaccatggca |
117 |
Q |
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| T |
2794728 |
aggatcgtggtccatcagctcacctattaggtgctgaaacttttcgtgattccagtggacccttcctaacttctgtaagcagatatgagctaccttggca |
2794827 |
T |
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| Q |
118 |
ggttctaaactgatttcaacacccatggccacttcctaaagtctggttggttccttgcattatctaacatccatcactcggattttacattttcagccaa |
217 |
Q |
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| T |
2794828 |
ggttctaaactgatttcaacatccatggccacttcctaaagtctggttggttccttgcattatctaacatccatcactcggattttacattttcagccaa |
2794927 |
T |
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| Q |
218 |
caaatttttccagcatatgcaatcacaaacttcagaaaaacatt |
261 |
Q |
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| T |
2794928 |
caaatttttccagcatatgcaatcacaaacttcagaaagacatt |
2794971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 2822020 - 2822074
Alignment:
| Q |
155 |
aaagtctggttggttccttgcattatctaacatccatcactcggattttacattt |
209 |
Q |
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| T |
2822020 |
aaagtctggttggttccttgcattatctatcaccgctcactcggatgttacattt |
2822074 |
T |
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