View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17176_high_23 (Length: 252)

Name: NF17176_high_23
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17176_high_23
NF17176_high_23
[»] chr3 (14 HSPs)
chr3 (9-235)||(9336556-9336782)
chr3 (9-235)||(9329852-9330078)
chr3 (32-222)||(9395298-9395491)
chr3 (16-109)||(41980877-41980970)
chr3 (10-111)||(9756397-9756498)
chr3 (9-109)||(41985644-41985744)
chr3 (9-106)||(9494811-9494908)
chr3 (10-110)||(9695615-9695715)
chr3 (9-109)||(9343861-9343961)
chr3 (9-109)||(9407382-9407482)
chr3 (9-109)||(9448330-9448430)
chr3 (30-109)||(9485969-9486048)
chr3 (30-109)||(13864241-13864320)
chr3 (9-110)||(9617462-9617563)
[»] chr7 (1 HSPs)
chr7 (34-118)||(450102-450186)
[»] chr6 (7 HSPs)
chr6 (30-117)||(7025793-7025880)
chr6 (11-118)||(7041514-7041621)
chr6 (30-117)||(7029850-7029937)
chr6 (30-120)||(7012857-7012947)
chr6 (30-120)||(9170854-9170944)
chr6 (29-109)||(7046875-7046955)
chr6 (30-120)||(9159484-9159574)
[»] chr1 (2 HSPs)
chr1 (9-53)||(4439876-4439920)
chr1 (9-45)||(18991220-18991256)
[»] chr2 (1 HSPs)
chr2 (9-50)||(20694360-20694401)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 9336556 - 9336782
Alignment:
Q  9 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336556 agcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 9336655  T
Q  109 atccatacaggaacacaataattttcatatctatccaccagcaacaactcaaactcactactctcaaccaagaatttattttgcccaccaaacaccggct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9336656 atccatacaggaacacaataattttcatatctatccaccagcaacaactcaaactcactactctcgaccaagaatttattttgcccaccaaacaccggct 9336755  T
Q  209 cagcgatcaaatgagtggtcaaatccg 235  Q
    |||||||||||||||||||||||||||    
T  9336756 cagcgatcaaatgagtggtcaaatccg 9336782  T

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Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 9329852 - 9330078
Alignment:
Q  9 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 108  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  9329852 agcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaaacacatca 9329951  T
Q  109 atccatacaggaacacaataattttcatatctatccaccagcaacaactcaaactcactactctcaaccaagaatttattttgcccaccaaacaccggct 208  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
T  9329952 atccatacaggaacacgataattttcatatctatccaccagcaacaactcaaactcactactctcgaccaagaatttacttttcccaccaaacaccggct 9330051  T
Q  209 cagcgatcaaatgagtggtcaaatccg 235  Q
    ||||||||||||||||||| |||||||    
T  9330052 cagcgatcaaatgagtggttaaatccg 9330078  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 9395298 - 9395491
Alignment:
Q  32 ccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacaggaacac---aata 128  Q
    ||||||||||||||  |||||||||||| |||| ||| |||||| ||||||  |||||||||||||||||||||||||||| ||||  |||||    ||     
T  9395298 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttacaataacacgatcatc 9395397  T
Q  129 attttcatatctatccaccagcaacaactcaaactcactactctcaaccaagaatttattttgcccaccaaacaccggctcagcgatcaaatga 222  Q
    ||||| |||| ||||||| |||||||||| ||| |||||| |||| |||||||||||| |||  || |||| ||| |||||||| || ||||||    
T  9395398 atttttatatatatccactagcaacaactgaaagtcactagtctcgaccaagaatttactttctccgccaatcacaggctcagctataaaatga 9395491  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 41980877 - 41980970
Alignment:
Q  16 aacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 109  Q
    |||||||||||||||||||||||||||||  |||| |||||| |||||| |||||||||  | |||||||||| | ||||||||||||||||||    
T  41980877 aacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaa 41980970  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 9756397 - 9756498
Alignment:
Q  10 gcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 109  Q
    |||||||| ||||| || | ||| || ||||||||| |||| || ||||||  || |||||||||||||||||||||||||||||||||| |||||||||    
T  9756397 gcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatcaagcctatacacatcaa 9756496  T
Q  110 tc 111  Q
    ||    
T  9756497 tc 9756498  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 41985644 - 41985744
Alignment:
Q  9 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 108  Q
    |||||| |||||||||||||||||||||||||||||  |||| |||||| ||| || |||||||||  | ||||| ||||||||||| || |||||||||    
T  41985644 agcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatca 41985743  T
Q  109 a 109  Q
    |    
T  41985744 a 41985744  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 9494908 - 9494811
Alignment:
Q  9 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacat 106  Q
    |||||| |||||||||||||||||||||||||||||| |||| |||||| || |||  || ||||| ||  |||| |||||||||||||||| |||||    
T  9494908 agcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactcatcaaattcacccatctcatctccttctcatcaagcctaagcacat 9494811  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 9695715 - 9695615
Alignment:
Q  10 gcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 109  Q
    ||||||||||||||  | | |||||| ||||||||| |||| |||||||| |||| |||||||||| | ||||| |||||||||||||| || |||||||    
T  9695715 gcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T
Q  110 t 110  Q
    |    
T  9695615 t 9695615  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 9343861 - 9343961
Alignment:
Q  9 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 108  Q
    |||||| ||||||||| |||||||||||||||||||  |||| |||||| | || | ||| |||||| | |||||  ||||||||||| |||||||||||    
T  9343861 agcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatcaagcttaaacacatca 9343960  T
Q  109 a 109  Q
    |    
T  9343961 a 9343961  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 9407382 - 9407482
Alignment:
Q  9 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 108  Q
    |||||| || |||||||||||| | |||||||||||| |||| |||||| || ||| ||| ||||| ||||| |  ||||| ||||| ||||||||||||    
T  9407382 agcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatca 9407481  T
Q  109 a 109  Q
    |    
T  9407482 a 9407482  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 9448330 - 9448430
Alignment:
Q  9 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 108  Q
    |||||| ||||||||  |||||||||||||||||||  |||| |||||| | || | ||| |||||  | ||||| ||||||| |||| |||||||||||    
T  9448330 agcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcataaagcttaaacacatca 9448429  T
Q  109 a 109  Q
    |    
T  9448430 a 9448430  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 9486048 - 9485969
Alignment:
Q  30 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 109  Q
    |||||| ||||||||| |||| || |||||  ||| ||  |||||| | ||||| |||||||||||||||||||||||||    
T  9486048 ccccaaaaacaaaaccatatcccccaaatttctcacctccacccacttcttctccttctcatcaagcctaaacacatcaa 9485969  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 13864241 - 13864320
Alignment:
Q  30 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 109  Q
    |||||| ||||||||| |||| || |||||  ||| ||  |||||| |||||||  ||||||||||||||||||||||||    
T  13864241 ccccaaaaacaaaaccctatcccccaaatttctcacctccacccactttttctccctctcatcaagcctaaacacatcaa 13864320  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 9617563 - 9617462
Alignment:
Q  9 agcagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatca 108  Q
    |||||| || |||||||||||| | | |||||||||| |||| ||||||||  ||| ||| |||||  | ||||||||||||| || ||| ||||| |||    
T  9617563 agcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaatttttcaacttcacccatttcttctctttctcatgaaacctgaacacttca 9617464  T
Q  109 at 110  Q
    ||    
T  9617463 at 9617462  T

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Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 450186 - 450102
Alignment:
Q  34 aagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacag 118  Q
    ||||||||||   |||||||||||||| ||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  450186 aagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacag 450102  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 7025793 - 7025880
Alignment:
Q  30 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccataca 117  Q
    |||||||||||||||| ||||||||||| |||||| ||| |||||| | ||||| ||||||| |||| |||||| |||||||| ||||    
T  7025793 ccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7025880  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 7041514 - 7041621
Alignment:
Q  11 cagagaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaat 110  Q
    |||||||||||||| | |  ||||||||||||||| |||| |||||| | |||| ||| |||||| | ||||| ||||||| |||  |||||| ||||||    
T  7041514 cagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaat 7041613  T
Q  111 ccatacag 118  Q
    ||||||||    
T  7041614 ccatacag 7041621  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 7029850 - 7029937
Alignment:
Q  30 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccataca 117  Q
    |||||||||||||||| |||| || ||| |||||| ||| |||||| | ||||| ||||||| |||| |||||| |||||||| ||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7029937  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 7012857 - 7012947
Alignment:
Q  30 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacagga 120  Q
    |||||||||||||| | ||||||||||| | |||| ||| |||||| | ||||| ||||||| |||| |||||| |||||| | |||||||    
T  7012857 ccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaattcttacagga 7012947  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 9170854 - 9170944
Alignment:
Q  30 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacagga 120  Q
    |||||||||||||||| |||| |||||| |||| |  || |||||| | ||||| ||||||| |||| |||||| |||||||| |||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacagga 9170944  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 7046875 - 7046955
Alignment:
Q  29 tccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 109  Q
    |||||||||||||||| ||||| |||||| |||| | ||| |||||| | ||||| ||||||| |||| |||||| |||||    
T  7046875 tccccaagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcattaagcttaaacaaatcaa 7046955  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 9159574 - 9159484
Alignment:
Q  30 ccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacagga 120  Q
    |||||||||||||||| |||| |||||| |||| |  || |||||| | ||||| ||||| | |||| |||||| |||||||| |||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttacagga 9159484  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 4439876 - 4439920
Alignment:
Q  9 agcagagaacgaacatccattccccaagaacaaaaccttatctcc 53  Q
    |||||| |||||||||||||||||||| ||||||||| |||||||    
T  4439876 agcagaaaacgaacatccattccccaaaaacaaaaccctatctcc 4439920  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 18991220 - 18991256
Alignment:
Q  9 agcagagaacgaacatccattccccaagaacaaaacc 45  Q
    |||||| ||||||||||||||||||||||||||||||    
T  18991220 agcagaaaacgaacatccattccccaagaacaaaacc 18991256  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 20694401 - 20694360
Alignment:
Q  9 agcagagaacgaacatccattccccaagaacaaaaccttatc 50  Q
    |||||| |||||||||||||||||||| ||||||||| ||||    
T  20694401 agcagaaaacgaacatccattccccaaaaacaaaaccctatc 20694360  T

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