View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17176_high_30 (Length: 209)
Name: NF17176_high_30
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17176_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 13011451 - 13011625
Alignment:
| Q |
19 |
gtcatcgccaattttccaacggtaacctgccttcaacaatgttcgagaggaccagatgctacgccaaatatagctaggattattccccaaggacgctcct |
118 |
Q |
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| T |
13011451 |
gtcatcgccaattttccaatggtaacctgccttcaacaatgttcgagaggaccagatgctacgccaaacatagctaggattatgccccaaggacgctcct |
13011550 |
T |
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| Q |
119 |
nnnnnnnnccccatttgggaaatatttagctttggagattctagacaccatatcatcagggttggtcaagaaatt |
193 |
Q |
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| T |
13011551 |
aaaaaaatccccatttgggaagtatttagctttggagattctagacaccatagcatcagggttggtcaagaaatt |
13011625 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 41688442 - 41688539
Alignment:
| Q |
21 |
catcgccaattttccaacggtaacctgccttcaacaatgttcgagaggaccagatgctacgccaaatatagctaggattattccccaaggacgctcct |
118 |
Q |
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| T |
41688442 |
catcaccaattctccactggtaacctgttttcaaaaatattcgagaagaccatatgctacgccaaacataactaggattgtgtcccaaagacgctcct |
41688539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 9679109 - 9679047
Alignment:
| Q |
37 |
acggtaacctgccttcaacaatgttcgagaggaccagatgctacgccaaatatagctaggatt |
99 |
Q |
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| T |
9679109 |
acggtaacctgctttcaacaatattcaagaagaccatatgctacgccaaacataattaggatt |
9679047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 41688561 - 41688613
Alignment:
| Q |
141 |
tatttagctttggagattctagacaccatatcatcagggttggtcaagaaatt |
193 |
Q |
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| T |
41688561 |
tatttagctttgaagattcgagagaccatagcatccgggttggttaagaaatt |
41688613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 193
Target Start/End: Original strand, 11738762 - 11738904
Alignment:
| Q |
50 |
ttcaacaatgttcgagaggaccagatgctacgccaaatatagctaggattattccccaaggacgctcctnnnnnnnnccccatttgggaaatatttagct |
149 |
Q |
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| T |
11738762 |
ttcaacaatattcgagaagaccatatgctactccaaacataactaggattgtgtcccaaagacgctcctaaaaaattccc-attcgaaaagtatttagct |
11738860 |
T |
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| Q |
150 |
ttggagattctagacaccatatcatcagggttggtcaagaaatt |
193 |
Q |
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| T |
11738861 |
ttgaagattcgagagaccatagcatccgggttggttaagaaatt |
11738904 |
T |
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