View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17176_high_7 (Length: 579)

Name: NF17176_high_7
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17176_high_7
NF17176_high_7
[»] chr5 (6 HSPs)
chr5 (14-560)||(38605236-38605789)
chr5 (446-560)||(40181191-40181308)
chr5 (455-560)||(38604990-38605098)
chr5 (514-560)||(40180547-40180593)
chr5 (83-116)||(40180851-40180884)
chr5 (523-560)||(41885955-41885992)
[»] chr8 (10 HSPs)
chr8 (71-231)||(44459952-44460121)
chr8 (71-231)||(44467485-44467654)
chr8 (458-560)||(44459614-44459716)
chr8 (458-560)||(44467147-44467249)
chr8 (71-231)||(34502528-34502698)
chr8 (70-215)||(44459275-44459420)
chr8 (70-215)||(44466808-44466953)
chr8 (446-560)||(34502246-34502360)
chr8 (446-560)||(44460316-44460430)
chr8 (446-560)||(44467849-44467963)
[»] chr1 (2 HSPs)
chr1 (70-240)||(46358821-46358991)
chr1 (446-560)||(46359186-46359300)
[»] chr6 (1 HSPs)
chr6 (70-110)||(410692-410732)


Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 14 - 560
Target Start/End: Original strand, 38605236 - 38605789
Alignment:
Q  14 cacagaaaaagtatgtcattctgccttagttcaacatcaaatttagttggaacatcgcatattgctgaaacaagggattccaaaacaggggtagtgatga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38605236 cacagaaaaagtatgtcattctgccttagttcaacatcaaatttagttggaacatcgcatattgctgaaacaagagattccaaaacaggggtagtgatga 38605335  T
Q  114 gatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38605336 gatgtgaattactcctaaaagcccacttgataaagtgaataagaatatgaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaat 38605435  T
Q  214 aattttgagtagaaaatgtggttgatgctgatg-------cagagtttccaagcatgtgaaactgaaacatctattaaatttgtaataataattatggag 306  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38605436 aattttgagtagaaaatgtggttgatgctgatggctgatgcagagtttccaagcatgtgaaactgaaacatctattaaatttgtaattataattatggag 38605535  T
Q  307 aggaggaggagtaccactaagaaatgtcattactatccggaaatcttcagatgcagtgacatcatctggacaaggaggaaggtaagtgtaagtgtaacct 406  Q
    |||   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  38605536 agg---aggagtaccactaagaaatgtcatcactatccggaaatcttcagatgcagtgacatcgtctggacaaggaggaaggtaagtgtaagtgtagcct 38605632  T
Q  407 tgagaagaagagtgaagattatcatctttggagt---gcagcagcagcaagttttgacagatagaagaggcttggtggatgatatcagcactacacgttg 503  Q
    ||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38605633 tgagaagaagagtgacgattatcatctttggagtgcagcagcagcagcaagttttgacagatagaagaggcttggtggatgatatcagcactacacgttg 38605732  T
Q  504 tggtcaaaagagcttgaagtgtaaagtaatatgtgtcttgatttggcacacattgaa 560  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38605733 tggtcaaaagagcttgaagtgtaaagtaatatgtgtcttgatttggcacacattgaa 38605789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 446 - 560
Target Start/End: Original strand, 40181191 - 40181308
Alignment:
Q  446 agcagcaagttttgacagatagaagaggcttggtggatgatatcagcactacacgttgtggtc---aaaagagcttgaagtgtaaagtaatatgtgtctt 542  Q
    |||||||| |||||| |||||||    ||||||||||| ||||||||||||||| ||||| ||   ||||||||||| |||||| |||||||||| ||||    
T  40181191 agcagcaacttttgatagatagactctgcttggtggatcatatcagcactacaccttgtgctcctcaaaagagcttgcagtgtatagtaatatgtatctt 40181290  T
Q  543 gatttggcacacattgaa 560  Q
    ||||||||||||||||||    
T  40181291 gatttggcacacattgaa 40181308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 560
Target Start/End: Original strand, 38604990 - 38605098
Alignment:
Q  455 ttttgacagatagaagaggcttggtggatgatatcagcactacacgttgtggtc---aaaagagcttgaagtgtaaagtaatatgtgtcttgatttggca 551  Q
    |||||||||||||||| |||||| ||||  ||||||||||| ||  |||| |||   ||||||||||  |||||||||  |||||  |||||||| ||||    
T  38604990 ttttgacagatagaagcggcttgctggagcatatcagcactgcaacttgttgtcttaaaaagagcttccagtgtaaagatatatgaatcttgattaggca 38605089  T
Q  552 cacattgaa 560  Q
    |||| ||||    
T  38605090 cacactgaa 38605098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 560
Target Start/End: Original strand, 40180547 - 40180593
Alignment:
Q  514 agcttgaagtgtaaagtaatatgtgtcttgatttggcacacattgaa 560  Q
    |||||| |||||||||  |||||| ||||||||||||||||||||||    
T  40180547 agcttgcagtgtaaagatatatgtatcttgatttggcacacattgaa 40180593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 40180851 - 40180884
Alignment:
Q  83 acaagggattccaaaacaggggtagtgatgagat 116  Q
    ||||||||||||| ||||||||||||||||||||    
T  40180851 acaagggattccagaacaggggtagtgatgagat 40180884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 560
Target Start/End: Complemental strand, 41885992 - 41885955
Alignment:
Q  523 tgtaaagtaatatgtgtcttgatttggcacacattgaa 560  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  41885992 tgtaaagtaatatgtatcttgatttggctcacattgaa 41885955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 44460121 - 44459952
Alignment:
Q  71 catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta------ctcctaa---aagcccacttgataaagtgaataagattat 161  Q
    |||||| |||||||||||||||||| |||||||||||||||||||| |  || |      ||||| |   |||||||||| |||||||| ||||||||||    
T  44460121 catatttctgaaacaagggattccagaacaggggtagtgatgagatcttgataagtgttcctcctcatccaagcccactttataaagtggataagattat 44460022  T
Q  162 gaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatg 231  Q
    |||| ||||||||||||||||||| |  | |||||||  ||||||||||||||| |||||||| ||||||    
T  44460021 gaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttgagtacaaaatg 44459952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 44467654 - 44467485
Alignment:
Q  71 catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta------ctcctaa---aagcccacttgataaagtgaataagattat 161  Q
    |||||| |||||||||||||||||| |||||||||||||||||||| |  || |      ||||| |   |||||||||| |||||||| ||||||||||    
T  44467654 catatttctgaaacaagggattccagaacaggggtagtgatgagatcttgataagtgttcctcctcatccaagcccactttataaagtggataagattat 44467555  T
Q  162 gaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatg 231  Q
    |||| ||||||||||||||||||| |  | |||||||  ||||||||||||||| |||||||| ||||||    
T  44467554 gaggcgaaacctttggggtttcaattaatttagtttgtgaggaggtttcaataactttgagtacaaaatg 44467485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 458 - 560
Target Start/End: Complemental strand, 44459716 - 44459614
Alignment:
Q  458 tgacagatagaagaggcttggtggatgatatcagcactacacgttgtggtcaaaagagcttgaagtgtaaagtaatatgtgtcttgatttggcacacatt 557  Q
    |||||||||||||  ||||| ||||| |||| || |||||| || ||||||||||||||||| || |||||||||||||| || |||||||||||||| |    
T  44459716 tgacagatagaagctgcttgatggatcatatgagtactacaggtcgtggtcaaaagagcttgcagagtaaagtaatatgtatcgtgatttggcacacact 44459617  T
Q  558 gaa 560  Q
    |||    
T  44459616 gaa 44459614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 458 - 560
Target Start/End: Complemental strand, 44467249 - 44467147
Alignment:
Q  458 tgacagatagaagaggcttggtggatgatatcagcactacacgttgtggtcaaaagagcttgaagtgtaaagtaatatgtgtcttgatttggcacacatt 557  Q
    |||||||||||||  ||||| ||||| |||| || |||||| || ||||||||||||||||| || |||||||||||||| || |||||||||||||| |    
T  44467249 tgacagatagaagctgcttgatggatcatatgagtactacaggtcgtggtcaaaagagcttgcagagtaaagtaatatgtatcgtgatttggcacacact 44467150  T
Q  558 gaa 560  Q
    |||    
T  44467149 gaa 44467147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 34502528 - 34502698
Alignment:
Q  71 catattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaatta---------ctcctaaaagcccacttgataaa-gtgaataagatta 160  Q
    ||||||||||||||||||||||||| |||| ||||||| |||||||||  || |         |||||  |||||||||| ||||| ||| |||||||||    
T  34502528 catattgctgaaacaagggattccagaacaagggtagtaatgagatgtttataagtgttcctcctcctccaagcccacttcataaaagtggataagatta 34502627  T
Q  161 tgaggagaaacctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatg 231  Q
    ||||| ||||||||||||||||||  |  | |||||||| | |||| |||||||| |||||||| ||||||    
T  34502628 tgaggcgaaacctttggggtttcagttaatttagtttgagaagaggcttcaataactttgagtacaaaatg 34502698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 44459420 - 44459275
Alignment:
Q  70 gcatattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaa 169  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| |     ||| || |  || || |||| |||||||  ||||||||||||||   |    
T  44459420 gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga 44459321  T
Q  170 acctttggggtttcaactggtatagtttgacaggaggtttcaataa 215  Q
    |||||||||| ||||||   | |||||||||| |||||||||||||    
T  44459320 acctttggggcttcaacaaatttagtttgacaagaggtttcaataa 44459275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 44466953 - 44466808
Alignment:
Q  70 gcatattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaa 169  Q
    |||||||| ||||||||||||||||| |||||||||||||||||| |     ||| || |  || || |||| |||||||  ||||||||||||||   |    
T  44466953 gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga 44466854  T
Q  170 acctttggggtttcaactggtatagtttgacaggaggtttcaataa 215  Q
    |||||||||| ||||||   | |||||||||| |||||||||||||    
T  44466853 acctttggggcttcaacaaatttagtttgacaagaggtttcaataa 44466808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 446 - 560
Target Start/End: Original strand, 34502246 - 34502360
Alignment:
Q  446 agcagcaagttttgacagatagaagaggcttggtggatgatatcagcactacacgttgtggtcaaaagagcttgaagtgtaaagtaatatgtgtcttgat 545  Q
    |||||||  |||||||||||||||| |||||||||| | |||||||   ||||  ||||| ||||||||||||  |||||||||   ||||| ||| |||    
T  34502246 agcagcatcttttgacagatagaagcggcttggtgggtcatatcagtgatacatcttgtgatcaaaagagctttcagtgtaaaggtgtatgtatctcgat 34502345  T
Q  546 ttggcacacattgaa 560  Q
    | |||||||||||||    
T  34502346 tcggcacacattgaa 34502360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 446 - 560
Target Start/End: Complemental strand, 44460430 - 44460316
Alignment:
Q  446 agcagcaagttttgacagatagaagaggcttggtggatgatatcagcactacacgttgtggtcaaaagagcttgaagtgtaaagtaatatgtgtcttgat 545  Q
    |||||||  |||||||| ||||||| |||||||||||| |||||||   ||||| |||||||||||| |||||| || |||  |  |||||| |||||||    
T  44460430 agcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtcaaaaaagcttgcagcgtatggatatatgtatcttgat 44460331  T
Q  546 ttggcacacattgaa 560  Q
    | ||||| |||||||    
T  44460330 tcggcacgcattgaa 44460316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 446 - 560
Target Start/End: Complemental strand, 44467963 - 44467849
Alignment:
Q  446 agcagcaagttttgacagatagaagaggcttggtggatgatatcagcactacacgttgtggtcaaaagagcttgaagtgtaaagtaatatgtgtcttgat 545  Q
    |||||||  |||||||| ||||||| |||||||||||| |||||||   ||||| |||||||||||| |||||| || |||  |  |||||| |||||||    
T  44467963 agcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtcaaaaaagcttgcagcgtatggatatatgtatcttgat 44467864  T
Q  546 ttggcacacattgaa 560  Q
    | ||||| |||||||    
T  44467863 tcggcacgcattgaa 44467849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 70 - 240
Target Start/End: Complemental strand, 46358991 - 46358821
Alignment:
Q  70 gcatattgctgaaacaagggattccaaaacaggggtagtgatgagatgtgaattactcctaaaagcccacttgataaagtgaataagattatgaggagaa 169  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| |     ||| || |  || || |||| |||||||  ||||||||||||||   |    
T  46358991 gcatatttctgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttga 46358892  T
Q  170 acctttggggtttcaactggtatagtttgacaggaggtttcaataattttgagtagaaaatgtggttgatg 240  Q
    |||||||||| ||||||   | |||||||||| ||||||||||||| ||| |||  ||| ||| |||||||    
T  46358891 acctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgatg 46358821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 446 - 560
Target Start/End: Complemental strand, 46359300 - 46359186
Alignment:
Q  446 agcagcaagttttgacagatagaagaggcttggtggatgatatcagcactacacgttgtggtcaaaagagcttgaagtgtaaagtaatatgtgtcttgat 545  Q
    |||||||  |||||||| ||||||| |||||||||||| |||||||   ||||| |||||||||||| |||||| || |||  |  |||||| |||||||    
T  46359300 agcagcatcttttgacacatagaagcggcttggtggatcatatcagtggtacactttgtggtcaaaaaagcttgcagcgtatggatatatgtatcttgat 46359201  T
Q  546 ttggcacacattgaa 560  Q
    | ||||| |||||||    
T  46359200 tcggcacgcattgaa 46359186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 410732 - 410692
Alignment:
Q  70 gcatattgctgaaacaagggattccaaaacaggggtagtga 110  Q
    |||||||||||||| |||||| |||| ||||||||||||||    
T  410732 gcatattgctgaaataagggactccagaacaggggtagtga 410692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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