View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17176_high_8 (Length: 517)
Name: NF17176_high_8
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17176_high_8 |
 | |
|
| [»] chr8 (11 HSPs) |
| |
|
| [»] scaffold0363 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 34 - 517
Target Start/End: Original strand, 5626665 - 5627171
Alignment:
| Q |
34 |
gatacatcaagccaatgtacatggtctcatgatgcctatgccttcccagcgaaagagtctggcctcatctatatccatttctctagccatcctaagaatc |
133 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |||| ||||||||||| |||||||||||| || ||||||| || | |||| |||||||||||||||| |
|
|
| T |
5626665 |
gatacttcaagccaatgtagatggtctcatgttgcccatgccttcccatcgaaagagtctgcccacatctat--ccctctctcgagccatcctaagaatc |
5626762 |
T |
|
| Q |
134 |
atctgggatggatcattgggacgttgaaagct----ctgtttatgattatgcccacatggtttacatttttaataattaatgttgatattttaatattga |
229 |
Q |
| |
|
|||||| ||||||||||||| |||| | |||| || ||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5626763 |
atctggaatggatcattggggcgttaatagctagccctctttgtgattatgcccacgtgttttacatttttaataattaatgttgatattttaatattga |
5626862 |
T |
|
| Q |
230 |
gaattatgttggttataattttggtatgataaaaaatgttaatttaagaagactaaatgaacaagcccacttcgaaacatgtgtattttgaacatgcata |
329 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||||||| |||||||| || | |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5626863 |
gaattatgttgcttata-ttttggtgtgataaaaaatgttgatttaaga---cttagtgaacaagcccacttcgatacatgtgtattttgaacatgcata |
5626958 |
T |
|
| Q |
330 |
caaacgtaagtgatttgtgtgaatgtttgaatatcttgttagttttgcctaagattttaattat--------------------gtttttacctctttgg |
409 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||||| | |
|
|
| T |
5626959 |
caaacataagtgatttgtgagaatatttgaatatcttgctagttttgcctaagattttaattttatgattcagatgaagaactggtttttacctctttag |
5627058 |
T |
|
| Q |
410 |
ttggcattcacatgatatattaactatta-ttatacaattttttgcacatgtcagg------actgaatccaacttaattgaagacattaccagagctgt |
502 |
Q |
| |
|
|||||||||||||||||||| | || | |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5627059 |
ttggcattcacatgatatat--attaacagttatacaattttttgcacatgttaggactcaaactgaatccaacttaattgaagacattaccagagctgt |
5627156 |
T |
|
| Q |
503 |
aataagaaaattaaa |
517 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5627157 |
aataagaaaattaaa |
5627171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 251 - 517
Target Start/End: Complemental strand, 5608487 - 5608199
Alignment:
| Q |
251 |
tggtatgataaaaaatgttaatttaagaagactaaatgaacaagcccacttcgaaacatgtgtattttgaacatgcatacaaacgtaagtgatttgtgtg |
350 |
Q |
| |
|
|||| |||||||||||||| |||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
5608487 |
tggtgtgataaaaaatgttgatttaaga---cttagtgaacaagcccacttcgatacatgtgtattttgaacatgcatacaaacataagtgatttgtgag |
5608391 |
T |
|
| Q |
351 |
aatgtttgaatatcttgttagttttgcctaagattttaattat--------------------gtttttacctctttggttggcattcacatgatatatt |
430 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5608390 |
aatatttgaatatcttgctagttttgcctaagattttaattttatgattcagatgaagaactggtttttacctctttagttggcattcacatgatatat- |
5608292 |
T |
|
| Q |
431 |
aactatta-ttatacaattttttgcacatgtcagg------actgaatccaacttaattgaagacattaccagagctgtaataagaaaattaaa |
517 |
Q |
| |
|
| || | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5608291 |
-attaacagttatacaattttttgcacatgttaggactcaaactgaatccaacttaattgaagacattaccagagctgtaataagaaaattaaa |
5608199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 395 - 517
Target Start/End: Original strand, 5549611 - 5549730
Alignment:
| Q |
395 |
tttttacctctttggttggcattcacatgatatattaactattattatacaattttttgcacatgtcaggactgaatccaacttaattgaagacattacc |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||| | ||||||| |||||||||| |
|
|
| T |
5549611 |
tttttacctctttggttggcattcacatgatatattaactatt---atacaattttttgcacctgccaggactgaatccgaattaattggagacattacc |
5549707 |
T |
|
| Q |
495 |
agagctgtaataagaaaattaaa |
517 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
5549708 |
ggagctgtattaagaaaattaaa |
5549730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 291 - 517
Target Start/End: Original strand, 14404413 - 14404658
Alignment:
| Q |
291 |
caagcccacttcgaaacatgtgtattttgaacatgcatacaaacgtaagtgatttgtgtgaatgtttgaatatcttgttagttttgcctaagattttaat |
390 |
Q |
| |
|
|||||||| || || |||||| |||||||||||| |||||||||| |||||||| | ||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
14404413 |
caagcccaatttgatacatgtctattttgaacatacatacaaacgaaagtgattcatctgaatgtttgagtatcttgttagttttgcctaatattttaat |
14404512 |
T |
|
| Q |
391 |
tat--------------------gtttttacctctttggttggcattcacatgatatattaact-attattatacaattttttgcacatgtcaggactga |
469 |
Q |
| |
|
| | ||| |||||| |||||||||||||||||||||||| ||| ||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
14404513 |
tttaagattcatatgaagttttggttcttacct--ttggttggcattcacatgatatatgtactaattattatataattgtttgcatatgtcaggactga |
14404610 |
T |
|
| Q |
470 |
atccaacttaattgaagacattaccagagctgtaataagaaaattaaa |
517 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
14404611 |
atctgacttaattgaagacattaccagagttgtattaggaaaattaaa |
14404658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 391
Target Start/End: Complemental strand, 6310904 - 6310774
Alignment:
| Q |
261 |
aaaaatgttaatttaagaagactaaatgaacaagcccacttcgaaacatgtgtattttgaacatgcatacaaacgtaagtgatttgtgtgaatgtttgaa |
360 |
Q |
| |
|
||||||||||||||||| | ||| || || |||||||| ||| | |||||| | || || | ||||||| ||| | || ||| |||||||||||||||| |
|
|
| T |
6310904 |
aaaaatgttaatttaagtacacttaaggatcaagcccaattcaatacatgtatgttctgtaaatgcatataaatgaaaatgaattgtgtgaatgtttgag |
6310805 |
T |
|
| Q |
361 |
tatcttgttagttttgcctaagattttaatt |
391 |
Q |
| |
|
||| ||||||||||| ||||| ||||||||| |
|
|
| T |
6310804 |
tattttgttagtttttcctaatattttaatt |
6310774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 5574028 - 5574111
Alignment:
| Q |
176 |
ttatgcccacatggtttacatttttaataattaatgttgatattttaatattgagaattatgttggttataattttggtatgat |
259 |
Q |
| |
|
||||| |||| || |||||||||||||||||||| || | ||||| || || ||||||| |||||||||||||||||| |||| |
|
|
| T |
5574028 |
ttatggccacgtgttttacatttttaataattaacatttaaatttttattttaagaattaggttggttataattttggtctgat |
5574111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 32633135 - 32633202
Alignment:
| Q |
447 |
ttttttgcacatgtcaggactgaatccaacttaattgaagacattaccagagctgtaataagaaaatt |
514 |
Q |
| |
|
|||||| || |||| ||||||||||| |||| ||||||||||||||||||| |||| | |||||||| |
|
|
| T |
32633135 |
ttttttacatatgttaggactgaatctgacttgattgaagacattaccagagttgtattgagaaaatt |
32633202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 391
Target Start/End: Original strand, 5571045 - 5571167
Alignment:
| Q |
269 |
taatttaagaagactaaatgaacaagcccacttcgaaacatgtgtattttgaacatgcatacaaacgtaagtgatttgtgtgaatgtttgaatatcttgt |
368 |
Q |
| |
|
||||||||||||||| || || |||||||| ||| | | |||| |||||||||||| || ||||| |||| ||| |||||||||| ||| || || | |
|
|
| T |
5571045 |
taatttaagaagacttaaggatcaagcccaattcaatatatgtttattttgaacatacacacaaattaaagttattcgtgtgaatgtatgagtacttttt |
5571144 |
T |
|
| Q |
369 |
tagttttgcctaagattttaatt |
391 |
Q |
| |
|
||||||| ||| | ||||||||| |
|
|
| T |
5571145 |
tagtttttcctgatattttaatt |
5571167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 517
Target Start/End: Complemental strand, 6310700 - 6310630
Alignment:
| Q |
447 |
ttttttgcacatgtcaggactgaatccaacttaattgaagacattaccagagctgtaataagaaaattaaa |
517 |
Q |
| |
|
|||||||||||||| ||||||||||| | | ||||||| |||||| ||||||||| || |||||||||| |
|
|
| T |
6310700 |
ttttttgcacatgttaggactgaatctgaaatgattgaagccattactagagctgtattaggaaaattaaa |
6310630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 500
Target Start/End: Original strand, 5571243 - 5571296
Alignment:
| Q |
447 |
ttttttgcacatgtcaggactgaatccaacttaattgaagacattaccagagct |
500 |
Q |
| |
|
||||||| | |||| ||||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
5571243 |
ttttttgaatatgttaggactgaatctaacatgattgaagacattaccagagct |
5571296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 6311026 - 6310959
Alignment:
| Q |
190 |
tttacatttttaataattaatgttgat---attttaatattgagaattatgttggttataattttggt |
254 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||| ||||||||||||| || | ||||||||||||| |
|
|
| T |
6311026 |
tttatatttttaatcattaatgttgatgatatttttatattgagaattacgtcgattataattttggt |
6310959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 291 - 517
Target Start/End: Complemental strand, 14440 - 14195
Alignment:
| Q |
291 |
caagcccacttcgaaacatgtgtattttgaacatgcatacaaacgtaagtgatttgtgtgaatgtttgaatatcttgttagttttgcctaagattttaat |
390 |
Q |
| |
|
|||||||| || || |||||| |||||||||||| |||||||||| |||||||| | ||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
14440 |
caagcccaatttgatacatgtctattttgaacatacatacaaacgaaagtgattcatctgaatgtttgagtatcttgttagttttgcctaatattttaat |
14341 |
T |
|
| Q |
391 |
tat--------------------gtttttacctctttggttggcattcacatgatatattaact-attattatacaattttttgcacatgtcaggactga |
469 |
Q |
| |
|
| | ||| |||||| |||||||||||||||||||||||| ||| ||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
14340 |
tttaagattcatatgaagttttggttcttacct--ttggttggcattcacatgatatatgtactaattattatataattgtttgcatatgtcaggactga |
14243 |
T |
|
| Q |
470 |
atccaacttaattgaagacattaccagagctgtaataagaaaattaaa |
517 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
14242 |
atctgacttaattgaagacattaccagagttgtattaggaaaattaaa |
14195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 19493834 - 19493750
Alignment:
| Q |
190 |
tttacatttttaataattaatgttgatattttaatattgagaat---tatgttggttataattttggtatga-taaaaaatgtta |
270 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| | ||||| ||| | ||||||||||||| | ||| |||||||||||| |
|
|
| T |
19493834 |
tttacatttttaatcattaatgttgatatttttataataagaattcatatttgggttataattttgttttgattaaaaaatgtta |
19493750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University