View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17176_high_9 (Length: 517)
Name: NF17176_high_9
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17176_high_9 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 225 - 501
Target Start/End: Complemental strand, 1328811 - 1328535
Alignment:
| Q |
225 |
caagcaatattctgccacgaaatcgccgttttccttttattcctattcatccaaacatcactattcttcttccaattcctaatctccaatttctcaccat |
324 |
Q |
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| T |
1328811 |
caagcaatattctgccacgaaatcgccgttttccttttattcctattcatccaaacatcactattcttcttccaattcctaatctccaatttctcaccat |
1328712 |
T |
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| Q |
325 |
cccctttcacaccaaaaaactccggtctcgacgctgccaccgcaatcctcggtaaccctaacgccgacgaaaccgattcactttcatctcccttccccga |
424 |
Q |
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| T |
1328711 |
cccctttcacaccaaaaaactccggtctcgacgctgccaccgcaatcctcggtaaccctaacgccgacgaaaccgattcactttcatctcccttccccga |
1328612 |
T |
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| Q |
425 |
aaacgccgacagaaacaccttccctgaactacttccagcgtggatttgtggaagcaacgaattcaaaccaaacacac |
501 |
Q |
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| T |
1328611 |
aaacgccgacagaaacaccttccctgaactacttccagcgtggatttgtggaagcaacgaattcaaaccaaacacac |
1328535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 1329027 - 1328876
Alignment:
| Q |
9 |
tattattcttcaaattcgcttcatcaagcattcgtacaaagcttgaaaataaacagcaacaattatttccacttgcaaaactaatcaaactcaacagagc |
108 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1329027 |
tattattcttcaaattcgcttcatcaagcattggtacaaagcttgaaaataaacagcaacaattatttccacttgcaaaactaatcaaactcaacagagc |
1328928 |
T |
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| Q |
109 |
aaataacctaaattatcatcaattaacgattgaaaattcacgcattatcctt |
160 |
Q |
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| T |
1328927 |
aaataacctaaattatcatcaattcacgattgcaaattcacgcattatcctt |
1328876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 503
Target Start/End: Original strand, 54591193 - 54591232
Alignment:
| Q |
464 |
gtggatttgtggaagcaacgaattcaaaccaaacacactg |
503 |
Q |
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| T |
54591193 |
gtggatttgtggaagcaacaaattcaaaccaagcacactg |
54591232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 501
Target Start/End: Original strand, 262058 - 262095
Alignment:
| Q |
464 |
gtggatttgtggaagcaacgaattcaaaccaaacacac |
501 |
Q |
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| T |
262058 |
gtggatttgtggaagcaacaaattcaaaccaagcacac |
262095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 501
Target Start/End: Original strand, 2829156 - 2829193
Alignment:
| Q |
464 |
gtggatttgtggaagcaacgaattcaaaccaaacacac |
501 |
Q |
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| T |
2829156 |
gtggatttgtggaagcaacaaattcaaaccaagcacac |
2829193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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