View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17176_low_13 (Length: 360)
Name: NF17176_low_13
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17176_low_13 |
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| [»] scaffold0729 (1 HSPs) |
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| [»] scaffold0552 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 31 - 344
Target Start/End: Original strand, 6593980 - 6594284
Alignment:
| Q |
31 |
tgatagaacacaggcagaacaacgaaatctgaggtttggcaacactgagttattttctccaattcttgtatacacgaacttgaattagtatagttttttg |
130 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6593980 |
tgatagaacacaggcagaacaaccaaatctgaggttcggcaacactgagttattttctccaattcttgtatacacgaacttgaattagtataattttttg |
6594079 |
T |
|
| Q |
131 |
aaaacaagactatagccactttgcagtcttgaattacattcagcacagactctgcccgttctccatgttgaaacctcttaatgaccccaaaaacatcgat |
230 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||||||||| ||| |
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| T |
6594080 |
aaaacaagactacagcgactttgcagtcttgaattacattcagcacagactctac---------atgctgaaacctcttaatgtccccaaaaacattgat |
6594170 |
T |
|
| Q |
231 |
accagcttctaaactaagagcctcttcgagactcgaaagaaaataacccttatcgtgagcgcagaaactcaagaacacgctgtaccttctcttctttgga |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6594171 |
accagcttctaaactaagagcctcttcgagactcgaaagaaaataacccttatcgtgagcgcagaaactcaagaacacgttgtaccttctcttctttgga |
6594270 |
T |
|
| Q |
331 |
tcggtagttaatat |
344 |
Q |
| |
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|||||||||||||| |
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| T |
6594271 |
tcggtagttaatat |
6594284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 73 - 330
Target Start/End: Complemental strand, 6791564 - 6791310
Alignment:
| Q |
73 |
cactgagttattttctccaattcttgtatacacgaacttgaattagtatagttttttgaaaacaagactatagccactttgcagtcttgaattacattca |
172 |
Q |
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|||| ||||||||||||||||||||||||||||||||| || |||| ||| ||||||||||| | |||||| | | ||||||||||||||||||||||| |
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| T |
6791564 |
cacttagttattttctccaattcttgtatacacgaactcgagttagcataattttttgaaaatactactataacaattttgcagtcttgaattacattca |
6791465 |
T |
|
| Q |
173 |
gcacagactctgcccgttctccatgttgaaacctcttaatgaccccaaaaacatcgataccagcttctaaactaagagcctcttcgagactcgaaagaaa |
272 |
Q |
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|| | |||||| || ||||||||||||||||||||| || || |||||||| |||| ||||||| | ||||||||||| | ||||| |||||||| |
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| T |
6791464 |
gcgctgactctacctgttctccatgttgaaacctct---tgtcctcaaaaacaacgattccagcttgtgaactaagagccgtatggagacgtgaaagaaa |
6791368 |
T |
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| Q |
273 |
ataacccttatcgtgagcgcagaaactcaagaacacgctgtaccttctcttctttgga |
330 |
Q |
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||||||| | || ||||||||||||||||||||||| ||||||| |||| |||||| |
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| T |
6791367 |
ataacccatgtcttgagcgcagaaactcaagaacacattgtacctcatcttgtttgga |
6791310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 6503152 - 6503221
Alignment:
| Q |
65 |
tttggcaacactgagttattttctccaattcttgtatacacgaacttgaattagtatagttttttgaaaa |
134 |
Q |
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||||||||||||| |||||||||||||||||||| | |||| | ||||| |||||||| || |||||||| |
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| T |
6503152 |
tttggcaacactgggttattttctccaattcttgaagacaccatcttgatttagtataattctttgaaaa |
6503221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 6737688 - 6737583
Alignment:
| Q |
71 |
aacactgagttattttctccaattcttgtatacacgaacttgaattagtatagttttttgaaaacaagactatagccactttgcagtcttgaattacatt |
170 |
Q |
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|||||| ||||||||||||||||||||| | |||| | || ||||||||||| || ||||| || | ||||| | | |||||||| |||| ||| ||||| |
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| T |
6737688 |
aacactcagttattttctccaattcttgaagacaccatctagaattagtataattctttgataatacgactacaacaactttgcaatcttcaatcacatt |
6737589 |
T |
|
| Q |
171 |
cagcac |
176 |
Q |
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|||||| |
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| T |
6737588 |
cagcac |
6737583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 6506659 - 6506728
Alignment:
| Q |
65 |
tttggcaacactgagttattttctccaattcttgtatacacgaacttgaattagtatagttttttgaaaa |
134 |
Q |
| |
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||||||||||||| |||||||||||||||||||| | |||| | ||||||||| ||| || |||||||| |
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| T |
6506659 |
tttggcaacactgggttattttctccaattcttgaagacaccatcttgaattaaaataattctttgaaaa |
6506728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 6830145 - 6830073
Alignment:
| Q |
35 |
agaacacaggcagaacaacgaaatctgaggtttggcaacactgagttattttctccaattcttgtatacacga |
107 |
Q |
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|||||||||| | |||||| || ||||||||| | ||||| | ||||||||||||||||||||| | |||||| |
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| T |
6830145 |
agaacacaggaaaaacaaccaagtctgaggttcgacaacattcagttattttctccaattcttgaacacacga |
6830073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 138 - 344
Target Start/End: Complemental strand, 16409965 - 16409759
Alignment:
| Q |
138 |
gactatagccactttgcagtcttgaattacattcagcacagactctgcccgttctccatgttgaaacctcttaatgaccccaaaaacatcgataccagct |
237 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16409965 |
gactatagcgactttgcagtcttgaattacattcagcacagactctgcccgttctccatgttgaaacctcttaatgaccccaaaaacatcgataccagct |
16409866 |
T |
|
| Q |
238 |
tctaaactaagagcctcttcgagactcgaaagaaaataacccttatcgtgagcgcagaaactcaagaacacgctgtaccttctcttctttggatcggtag |
337 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| || || |||||| |||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
16409865 |
tctaaactaagagcctcttcgagattcgaaagaaaataacctttgtcctgagcgtagaaactcaagaacacattgtaccttctcttccttggatcggtag |
16409766 |
T |
|
| Q |
338 |
ttaatat |
344 |
Q |
| |
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| ||||| |
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| T |
16409765 |
taaatat |
16409759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 73 - 317
Target Start/End: Original strand, 7065 - 7306
Alignment:
| Q |
73 |
cactgagttattttctccaattcttgtatacacgaacttgaattagtatagttttttgaaaacaagactatagccactttgcagtcttgaattacattca |
172 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || |||| ||| ||||||||||| | |||||| | | ||||||||||||||||||||||| |
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| T |
7065 |
cacttagttattttctccaattcttgtatacacgaactcgagttagcataattttttgaaaatactactataacaattttgcagtcttgaattacattca |
7164 |
T |
|
| Q |
173 |
gcacagactctgcccgttctccatgttgaaacctcttaatgaccccaaaaacatcgataccagcttctaaactaagagcctcttcgagactcgaaagaaa |
272 |
Q |
| |
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|| | |||||| || ||||||||||||||||||||| || || |||||||| |||| ||||||| | ||||||||||| | ||||| |||||||| |
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| T |
7165 |
gcgctgactctacctgttctccatgttgaaacctct---tgtcctcaaaaacaacgattccagcttgtgaactaagagccgtatggagacgtgaaagaaa |
7261 |
T |
|
| Q |
273 |
ataacccttatcgtgagcgcagaaactcaagaacacgctgtacct |
317 |
Q |
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||||||| | || ||||||||||||||||||||||| ||||||| |
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| T |
7262 |
ataacccatgtcttgagcgcagaaactcaagaacacattgtacct |
7306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 9646 - 9574
Alignment:
| Q |
35 |
agaacacaggcagaacaacgaaatctgaggtttggcaacactgagttattttctccaattcttgtatacacga |
107 |
Q |
| |
|
|||||||||| | |||||| || ||||||||| | ||||| | ||||||||||||||||||||| | |||||| |
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|
| T |
9646 |
agaacacaggaaaaacaaccaagtctgaggttcgacaacattcagttattttctccaattcttgaacacacga |
9574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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