View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17176_low_14 (Length: 346)

Name: NF17176_low_14
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17176_low_14
NF17176_low_14
[»] chr8 (16 HSPs)
chr8 (1-328)||(36199190-36199517)
chr8 (114-174)||(36214872-36214932)
chr8 (1-111)||(36213498-36213608)
chr8 (114-239)||(36197168-36197293)
chr8 (114-174)||(36188805-36188865)
chr8 (114-174)||(36210286-36210346)
chr8 (1-95)||(36201212-36201306)
chr8 (114-239)||(36202727-36202852)
chr8 (114-239)||(36208199-36208324)
chr8 (1-93)||(36184885-36184977)
chr8 (1-93)||(36208069-36208161)
chr8 (114-172)||(36185015-36185073)
chr8 (1-120)||(36197044-36197156)
chr8 (35-111)||(36202631-36202707)
chr8 (130-174)||(36213650-36213694)
chr8 (114-174)||(36201342-36201400)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 36199190 - 36199517
Alignment:
Q  1 tctgtagttgtcaatcttttattattaacaaaacacatgcaacaagtagattcagctatatctgtcgtatcatcaaaattcagacctattgcatccccga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199190 tctgtagttgtcaatcttttattattaacaaaacacatgcaacaagtagattcagctatatctgtcgtatcatcaaaattcagacctattgcatccccga 36199289  T
Q  101 ttagtgtttgacatctttgtcacagttgttgtgacaatcttttggaacaatagatctgtctcggctcttcttatgacggttttcatacaagccttgactc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  36199290 ttagtgtttgacatctttgtcacagttgttgtgacaatcttttggaacaattgatctctctcggctcttcttatgacggttttcatataagccttgactc 36199389  T
Q  201 ttttatctagaccacatagtccgattaaattttctccttaaccctatcattgttaggaatgtaaatgtccggaaaataagtccctgcaatatattccata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||    
T  36199390 ttttatctagaccacatagtccgattaaattttctccttaaccctatcattgttaggaatgtaaatgtccggaaaataagcccctgcaatatcttctata 36199489  T
Q  301 atctgttcttgctataaaagtgccaaac 328  Q
    ||||||||||||||||||||||||||||    
T  36199490 atctgttcttgctataaaagtgccaaac 36199517  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 36214872 - 36214932
Alignment:
Q  114 tctttgtcacagttgttgtgacaatcttttggaacaatagatctgtctcggctcttcttat 174  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| |||| |||||||||||    
T  36214872 tctttgtcacagttgctgtgacaatcttttggaacaattgatctctctcagctcttcttat 36214932  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 36213498 - 36213608
Alignment:
Q  1 tctgtagttgtcaatcttttattattaacaaaacacatgcaacaagtagattcagctatatctgtcgtatcatcaaaattcagacctattgcatccccga 100  Q
    |||| |||||||| | ||||| ||||| ||||||||||||||||||| ||||| |||| ||   || |||||| |||||| |||||||||||||| || |    
T  36213498 tctgcagttgtcactgttttactattaccaaaacacatgcaacaagttgattcggctacattcatcttatcattaaaattgagacctattgcatcaccaa 36213597  T
Q  101 ttagtgtttga 111  Q
    || ||||||||    
T  36213598 tttgtgtttga 36213608  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 36197168 - 36197293
Alignment:
Q  114 tctttgtcacagttgttgtgacaatcttttggaacaatagatctgtctcggctcttcttatgacggttttcatacaagccttgactcttttatctagacc 213  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||| |||| |||||||||||  | |||||   | ||  |||||||||||| ||| | ||    
T  36197168 tctttgtcacagttgctgtgacaatcttttggaataattgatctctctcagctcttcttatagctgtttttgcagaatgcttgactcttttttctggccc 36197267  T
Q  214 acatagtccgattaaattttctcctt 239  Q
    ||||| ||| || | |||||||||||    
T  36197268 acataatccaatgatattttctcctt 36197293  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 36188805 - 36188865
Alignment:
Q  114 tctttgtcacagttgttgtgacaatcttttggaacaatagatctgtctcggctcttcttat 174  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| |||| ||| |||||||    
T  36188805 tctttgttacagttgttgtgacaatcttttggaacaattgatctttctcagctgttcttat 36188865  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 36210286 - 36210346
Alignment:
Q  114 tctttgtcacagttgttgtgacaatcttttggaacaatagatctgtctcggctcttcttat 174  Q
    ||||||||||||||||||||||||||||||||||| |  ||||| |||| |||||||||||    
T  36210286 tctttgtcacagttgttgtgacaatcttttggaacgaatgatctttctctgctcttcttat 36210346  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 36201212 - 36201306
Alignment:
Q  1 tctgtagttgtcaatcttttattattaacaaaacacatgcaacaagtagattcagctatatctgtcgtatcatcaaaattcagacctattgcatc 95  Q
    |||| |||||||| ||||||| ||||| ||||||||||||||||||| ||||  |||   || ||| |||||| |||||| ||||||||||||||    
T  36201212 tctgcagttgtcattcttttactattaccaaaacacatgcaacaagttgattttgctgcctccgtcatatcattaaaattgagacctattgcatc 36201306  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 36202727 - 36202852
Alignment:
Q  114 tctttgtcacagttgttgtgacaatcttttggaacaatagatctgtctcggctcttcttatgacggttttcatacaagccttgactcttttatctagacc 213  Q
    |||| ||||| |||| |||||||||||||| ||||||| ||||| |||| | |||||| || |||||| | | | ||||||||||||||| |||| | ||    
T  36202727 tcttcgtcacggttgctgtgacaatcttttcgaacaattgatctctctcagatcttctcataacggttgtgacagaagccttgactctttcatctggccc 36202826  T
Q  214 acatagtccgattaaattttctcctt 239  Q
     |||| ||| ||||  ||||||||||    
T  36202827 gcataatccaattatgttttctcctt 36202852  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 36208199 - 36208324
Alignment:
Q  114 tctttgtcacagttgttgtgacaatcttttggaacaatagatctgtctcggctcttcttatgacggttttcatacaagccttgactcttttatctagacc 213  Q
    |||| |||||||||| |||||||||||||||||||||| ||||| |||| ||| ||||| |    ||||| | | ||  ||||||| |||||||| | ||    
T  36208199 tcttggtcacagttgctgtgacaatcttttggaacaattgatctctctcagcttttcttctagatgttttaacagaatgcttgactattttatctggccc 36208298  T
Q  214 acatagtccgattaaattttctcctt 239  Q
     |||| |||||||| |||||||||||    
T  36208299 gcataatccgattatattttctcctt 36208324  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 36184885 - 36184977
Alignment:
Q  1 tctgtagttgtcaatcttttattattaacaaaacacatgcaacaagtagattcagctatatctgtcgtatcatcaaaattcagacctattgca 93  Q
    |||| |||||||| |||||| |||||| || |||||| ||||||||  | ||||| || |||  || ||||||||||||||||||||||||||    
T  36184885 tctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattcagacctattgca 36184977  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 36208069 - 36208161
Alignment:
Q  1 tctgtagttgtcaatcttttattattaacaaaacacatgcaacaagtagattcagctatatctgtcgtatcatcaaaattcagacctattgca 93  Q
    |||| |||||||| |||||| |||||| || |||||| ||||||||  | ||||| || |||  || ||||||||||||||||||||||||||    
T  36208069 tctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattcagacctattgca 36208161  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 36185015 - 36185073
Alignment:
Q  114 tctttgtcacagttgttgtgacaatcttttggaacaatagatctgtctcggctcttctt 172  Q
    |||| |||||||||| |||||||||||||||||||||| ||||| |||| ||| |||||    
T  36185015 tcttggtcacagttgctgtgacaatcttttggaacaattgatctctctcagcttttctt 36185073  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 36197044 - 36197156
Alignment:
Q  1 tctgtagttgtcaatcttttattattaacaaaacacatgcaacaagtagattcagctatatctgtcgtatcatcaaaattcagacctattgcatccccga 100  Q
    |||| ||||| || ||||||  ||||| ||||| ||||||||||||| |||||||||  ||| ||| ||||||||||||      |||||||||| || |    
T  36197044 tctgcagttgccattctttttctattaccaaaaaacatgcaacaagttgattcagctggatccgtcttatcatcaaaat------ctattgcatcaccaa 36197137  T
Q  101 ttagtgtttgacatctttgt 120  Q
    ||||||||||| ||||||||    
T  36197138 ttagtgtttga-atctttgt 36197156  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 36202631 - 36202707
Alignment:
Q  35 acatgcaacaagtagattcagctatatctgtcgtatcatcaaaattcagacctattgcatccccgattagtgtttga 111  Q
    |||||||||| |  |||||||||| |||  || |||||||||||||||||| ||||||||| || ||| ||||||||    
T  36202631 acatgcaacaggatgattcagctagatcaatcttatcatcaaaattcagacatattgcatcaccaatttgtgtttga 36202707  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 36213650 - 36213694
Alignment:
Q  130 tgtgacaatcttttggaacaatagatctgtctcggctcttcttat 174  Q
    |||||||||||||||||||||| ||||| |||| |||||||||||    
T  36213650 tgtgacaatcttttggaacaattgatctctctcagctcttcttat 36213694  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 36201342 - 36201400
Alignment:
Q  114 tctttgtcacagttgttgtgacaatcttttggaacaatagatctgtctcggctcttcttat 174  Q
    |||| |||||||||| ||||||| |||||||||||||| ||||  |||| |||||||||||    
T  36201342 tcttggtcacagttgctgtgacagtcttttggaacaattgatc--tctcagctcttcttat 36201400  T

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