View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17176_low_15 (Length: 330)
Name: NF17176_low_15
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17176_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 30354773 - 30354449
Alignment:
| Q |
1 |
cataaccccattcaaacattgtgaacatgttatgaggatttatcagaacatgcatgtttcttagttcttagtatgttggttaagtcctaagaaatattcg |
100 |
Q |
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| T |
30354773 |
cataaccccattcaaacattgtgaacatgttatgaggatttatcagaacatgcatgtttcttagttcttagtatgttggttaagtccaaagaaatatgcg |
30354674 |
T |
|
| Q |
101 |
tgagtgtaagtcttgacccttgcaacaatacgacatgtgacatctcctacatctttgtgagcataagtcccttaaatagttttggagcaacaccacattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30354673 |
tgagtgtaagtcttgacccttgcaacaatacgacatgtgacgtctcctacatctttgtgagcataagtcccttaaatagttttggagcaacaccacattc |
30354574 |
T |
|
| Q |
201 |
tgaagttaattacatgtgagagtataagtccacgacaaatcgatatggagcaatacgacatctggcgggccatgaaacttaggcccacagggataaacat |
300 |
Q |
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||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| || ||||||| |
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| T |
30354573 |
tgaagttaattacatgtgagagtataaatccatgacatatcgatatggagcaatacgacatctggcaggccacgaaacttaggcccacaagggtaaacat |
30354474 |
T |
|
| Q |
301 |
cgtttatataaaccttatataatat |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
30354473 |
cgtttatataaaccttatataatat |
30354449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 4 - 259
Target Start/End: Complemental strand, 30357203 - 30356954
Alignment:
| Q |
4 |
aaccccattcaaacattgtgaacatgttatgaggatttatcagaacatgcatgtttcttagttcttagtatgttggttaagtcctaagaaatattcgtga |
103 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||| ||| ||| | |||| ||||||||||| ||| || || ||||||||| | |||| |
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| T |
30357203 |
aaccccattcaaacattgtaaacatgttatgaggaattatcaacaca--cat--tgcttatttcttagtatgatggctaggttctaagaaattt--gtga |
30357110 |
T |
|
| Q |
104 |
gtgtaagtcttgacccttgcaacaatacgacatgtgacatctcctacatctttgtgagcataagtcccttaaatagttttggagcaacaccacattctga |
203 |
Q |
| |
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||||||||||||||||| | |||| ||||| ||| |||||||||| | || || |||| |||||||||||||| ||||||| | ||||||||| |
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| T |
30357109 |
gtgtaagtcttgaccctgggtggaatatgacatttgatatctcctacaaatatgcaagtataactcccttaaatagttacggagcaatatgacattctga |
30357010 |
T |
|
| Q |
204 |
agttaattacatgtgagagtataagtccacgacaaatcgatatggagcaatacgac |
259 |
Q |
| |
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| ||| |||| |||| |||| ||||||||| ||||| | ||||||| |||||||| |
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| T |
30357009 |
aattagttacttgtggaagtaaaagtccacggcaaattggtatggagaaatacgac |
30356954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 172 - 317
Target Start/End: Complemental strand, 30375053 - 30374908
Alignment:
| Q |
172 |
ttaaatagttttggagcaacaccacattctgaagttaattacatgtgagagtataagtccacgacaaatcgatatggagcaatacgacatctggcgggcc |
271 |
Q |
| |
|
|||||||||| | ||| ||||| | ||| ||||| |||||| |||| ||||||||||| | | |||||||||||||||||||||||||||||| | || |
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| T |
30375053 |
ttaaatagttatagagaaacacaatattacgaagtcaattacttgtgggagtataagtctatggcaaatcgatatggagcaatacgacatctggatgtcc |
30374954 |
T |
|
| Q |
272 |
atgaaacttaggcccacagggataaacatcgtttatataaacctta |
317 |
Q |
| |
|
|||||||||||||||| || ||| ||| ||||||||||| |||| |
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|
| T |
30374953 |
tagaaacttaggcccacaaggttaaccattgtttatataaatctta |
30374908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 321
Target Start/End: Complemental strand, 30370833 - 30370520
Alignment:
| Q |
4 |
aaccccattcaaacattgtgaacatgttatgaggatttatcagaacatgcatgtttcttagttcttagtatgttggttaagtcctaagaaatattcgtga |
103 |
Q |
| |
|
||||||||| |||||||||||||||||||| | | ||| || |||| | ||||||||||||| ||| | |||||| || |||||| || | | || |
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| T |
30370833 |
aaccccattaaaacattgtgaacatgttatatgcaattagcataacaag----tttcttagttcttggtaagatggttaggttctaagagatctgtgcga |
30370738 |
T |
|
| Q |
104 |
gtgtaagtcttgacccttgcaacaatacgacatgtgacatctcctacatctttgtgagcataagtcccttaaatagttttggagcaacaccacattctga |
203 |
Q |
| |
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|||||| || | ||| | | ||||| || || |||| |||||||| | | || ||| |||| || ||||||||||| | || ||||| | ||| || |
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| T |
30370737 |
gtgtaaatcctaaccttgagagcaatatgatatctgacgtctcctacttttgtgcgagtataactctcttaaatagttataaagaaacacaatattaaga |
30370638 |
T |
|
| Q |
204 |
agttaattacatgtgagagtataagtccacgacaaatcgatatggagcaatacgacatctggcgggccatgaaacttaggcccacagggataaacatcgt |
303 |
Q |
| |
|
||| |||||| |||| ||||||||||| | | ||||||| |||||||||||| ||||||| | | || ||||||||| ||||| | ||| ||| || |
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| T |
30370637 |
agtcaattacttgtgggagtataagtctatggcaaatcggtatggagcaataggacatctagatgtcctataaacttaggtccacaaagttaaccattgt |
30370538 |
T |
|
| Q |
304 |
ttatataaaccttatata |
321 |
Q |
| |
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||||||||| |||||||| |
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| T |
30370537 |
ttatataaatcttatata |
30370520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 9473790 - 9473899
Alignment:
| Q |
154 |
tttgtgagcataagtcccttaaatagttttggagcaacaccacattctgaagttaattacatgtgagagtataagtccacgacaaatcgatatggagcaa |
253 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||| ||||| || | | ||| ||||||| ||| ||||||||| || | ||| |||||||||| |
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| T |
9473790 |
tttgtgagtataagtcccttaaatagttgtggagcaacatgacattatggactcaataacatgtgggaggataagtccatgatatatcagtatggagcaa |
9473889 |
T |
|
| Q |
254 |
tacgacatct |
263 |
Q |
| |
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| ||||||| |
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| T |
9473890 |
tctgacatct |
9473899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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