View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17176_low_16 (Length: 328)
Name: NF17176_low_16
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17176_low_16 |
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| [»] scaffold0729 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 6593966 - 6593705
Alignment:
| Q |
1 |
ttctatcatggagatatgtttggaggaaacgcttttcgtgattttcttgatagaatatcaatggaggaaacctctaaagaagaagacaagctcatgacct |
100 |
Q |
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| T |
6593966 |
ttctatcatggagatatgtttggaggagacacttttcatgattttctggatagaatatcaatggaggaaatctctaaagaagaagacaagctcatgacct |
6593867 |
T |
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| Q |
101 |
gggtagcagcgatcactaaagctaacagatatttaggatcacgtgatctcatactcaaacccgtatacaggtaattttaagttcttttttaaaataactg |
200 |
Q |
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| T |
6593866 |
gggtagcagcgatcactaaagctaacaaatatttaggatcacgtgatctcatacccaaacccatatacaggtaattttaagttcttttttaaaataactg |
6593767 |
T |
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| Q |
201 |
agacttgagattttaatttacacctttcttttggcctatgcacatgttggagaattattata |
262 |
Q |
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| T |
6593766 |
agacttgagattttaatttacacctatcttttggcctatgcacatgtaggagaattattata |
6593705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 6791638 - 6791852
Alignment:
| Q |
10 |
ggagatatgtttggaggaaacgcttttcgtgattttcttgatagaatatcaatggaggaaacctctaaagaagaagacaagctcatgacctgggtagcag |
109 |
Q |
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| T |
6791638 |
ggaggtatgtttggaggagacacttttcatgattttctcaacagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcag |
6791737 |
T |
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| Q |
110 |
cgatcactaaagctaacagatatttaggatcacgtgatctcatactcaaacccgtatacaggtaattttaagttcttttttaaaataactgagacttgag |
209 |
Q |
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| T |
6791738 |
cgatcactaaagcaaacaattatttaggttcaagtgatctcatacataaaccaatatataggtaattttaagttc-tttttaaaatagttgagacttgag |
6791836 |
T |
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| Q |
210 |
attttaatttacacct |
225 |
Q |
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| T |
6791837 |
attttaatatacacct |
6791852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 6593685 - 6593623
Alignment:
| Q |
264 |
catatattatgcaggtacgaacatgtaccaattatggattatattaaggatattgttggacat |
326 |
Q |
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| T |
6593685 |
catatattatacaggtacgaacatgtatcaattacggactatattaaggatatagttgaacat |
6593623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 6991 - 6777
Alignment:
| Q |
10 |
ggagatatgtttggaggaaacgcttttcgtgattttcttgatagaatatcaatggaggaaacctctaaagaagaagacaagctcatgacctgggtagcag |
109 |
Q |
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| T |
6991 |
ggaggtatgtttggaggagacacttttcatgattttctcaacagaatatcaatggaggaaatctctaaagaagaggacaagctcatgacctgggtagcag |
6892 |
T |
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| Q |
110 |
cgatcactaaagctaacagatatttaggatcacgtgatctcatactcaaacccgtatacaggtaattttaagttcttttttaaaataactgagacttgag |
209 |
Q |
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| T |
6891 |
cgatcactaaagcaaacaattatttaggttcaagtgatctcatacataaaccaatatataggtaattttaagttct-ttttaaaatagttgagacttgag |
6793 |
T |
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| Q |
210 |
attttaatttacacct |
225 |
Q |
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|||||||| ||||||| |
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| T |
6792 |
attttaatatacacct |
6777 |
T |
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