View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17176_low_18 (Length: 290)
Name: NF17176_low_18
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17176_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 54984411 - 54984289
Alignment:
| Q |
149 |
tttcaagaaattctgataagcatttgattaaattttgcattgatcaattggtcttccgtagggagaaatctttggatacaaaatagcataatctttcaca |
248 |
Q |
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| T |
54984411 |
tttcaagaaattctgataagcatttgattaaattttgcattgatcaattggtcttccgtaaggagaaatctttggatacaaaatagcataatctttcaca |
54984312 |
T |
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| Q |
249 |
gttttgtataatactggccttga |
271 |
Q |
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| T |
54984311 |
gttttgtataatactggccttga |
54984289 |
T |
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Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 54984546 - 54984473
Alignment:
| Q |
14 |
agagaaaattcaaacaccatacaacataaacaccaataaaaacacgactcaacaaaaggtaccaccaacacgaa |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54984546 |
agagaaaattcaaacaccatacaacataaacaccaataaaaacacgactcaacaaaaggtaccaccaacacgaa |
54984473 |
T |
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