View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17176_low_23 (Length: 252)

Name: NF17176_low_23
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17176_low_23
NF17176_low_23
[»] chr8 (12 HSPs)
chr8 (20-234)||(5608008-5608222)
chr8 (20-234)||(5627148-5627362)
chr8 (22-234)||(5549709-5549921)
chr8 (21-234)||(6310439-6310652)
chr8 (20-234)||(14404635-14404849)
chr8 (71-234)||(5571341-5571504)
chr8 (53-234)||(32633215-32633399)
chr8 (12-213)||(13164791-13164992)
chr8 (75-187)||(12177318-12177430)
chr8 (75-187)||(12421746-12421858)
chr8 (75-234)||(12188592-12188751)
chr8 (75-234)||(12433020-12433179)
[»] scaffold0363 (1 HSPs)
scaffold0363 (20-234)||(14004-14218)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 5608222 - 5608008
Alignment:
Q  20 cagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttctaatttcatacctgatgaaaactattggagcattaaatctttaataaaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||    
T  5608222 cagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttgtaatttcatacctgatgaaaactattggagcgttcaatctttaataaaa 5608123  T
Q  120 tttgactcaacagaagttcaaatcattggactttggggtatgggaggcattggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5608122 tttgactcaacagaagttcaaatcattggactttggggtatgggaggcataggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaat 5608023  T
Q  220 atgatggcagttgct 234  Q
    |||||||||||||||    
T  5608022 atgatggcagttgct 5608008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 5627148 - 5627362
Alignment:
Q  20 cagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttctaatttcatacctgatgaaaactattggagcattaaatctttaataaaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||    
T  5627148 cagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttgtaatttcatacctgatgaaaactattggagcgttcaatctttaataaaa 5627247  T
Q  120 tttgactcaacagaagttcaaatcattggactttggggtatgggaggcattggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5627248 tttgactcaacagaagttcaaatcattggactttggggtatgggaggcataggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaat 5627347  T
Q  220 atgatggcagttgct 234  Q
    |||||||||||||||    
T  5627348 atgatggcagttgct 5627362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 5549709 - 5549921
Alignment:
Q  22 gagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttctaatttcatacctgatgaaaactattggagcattaaatctttaataaaatt 121  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  5549709 gagctgtattaagaaaattaaatcaacaaagcacaattgatcttacttgtaatttcatacctgatgaaaactatcggagcattcaatctttaataaaatt 5549808  T
Q  122 tgactcaacagaagttcaaatcattggactttggggtatgggaggcattggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaatat 221  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5549809 tgattcaacagaagttcaaatcattggagtttggggtatgggaggcattggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaatat 5549908  T
Q  222 gatggcagttgct 234  Q
    |||||||||||||    
T  5549909 gatggcagttgct 5549921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 6310652 - 6310439
Alignment:
Q  21 agagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttctaatttcatacctgatgaaaactattggagcattaaatctttaataaaat 120  Q
    ||||||||| || ||||||||||||||||    |||| ||||||| | | ||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  6310652 agagctgtattaggaaaattaaatcaacagtatacaaatgatcttccatgtaatttcatacttgatgaaaactattggagcattcaatctttaataaaat 6310553  T
Q  121 ttgactcaacagaagttcaaatcattggactttggggtatgggaggcattggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaata 220  Q
     |||   |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||| |||||    
T  6310552 ctgatctaacagaagttcaaatcattggactttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaata 6310453  T
Q  221 tgatggcagttgct 234  Q
    ||| ||||||||||    
T  6310452 tgaaggcagttgct 6310439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 14404635 - 14404849
Alignment:
Q  20 cagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttctaatttcatacctgatgaaaactattggagcattaaatctttaataaaa 119  Q
    ||||| |||| || ||||||||||||| ||| |||||| ||||||||| | |||||| |||| |||||||||||||||||||||| |||| |||||||||    
T  14404635 cagagttgtattaggaaaattaaatcagcaatgcacaaatgatcttacatgtaattttatacttgatgaaaactattggagcattcaatcattaataaaa 14404734  T
Q  120 tttgactcaacagaagttcaaatcattggactttggggtatgggaggcattggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaat 219  Q
    ||||| ||| || ||||||||||||||||| ||||||||||||||||||  |||||||||||||||||  ||  | ||||||||||| ||||||||||||    
T  14404735 tttgattcagcacaagttcaaatcattggaatttggggtatgggaggcacaggtaagacaacccttgcttctattctgtttcaaaggttctctttcaaat 14404834  T
Q  220 atgatggcagttgct 234  Q
    |||| ||||| ||||    
T  14404835 atgaaggcagctgct 14404849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 5571341 - 5571504
Alignment:
Q  71 taatttcatacctgatgaaaactattggagcattaaatctttaataaaatttgactcaacagaagttcaaatcattggactttggggtatgggaggcatt 170  Q
    |||||| |||| ||||||||||||||||  | ||  |||||||||||||||||| ||||||  |||||||||||||||||||||||| |||||||||| |    
T  5571341 taatttgatacttgatgaaaactattgggccgttcgatctttaataaaatttgattcaacaacagttcaaatcattggactttggggaatgggaggcact 5571440  T
Q  171 ggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaatatgatggcagttgct 234  Q
    ||||||||||| |||||  ||||||||||||||||| |||||||||||||||| |||| |||||    
T  5571441 ggtaagacaactcttgctgctgctatgtttcaaaggttctctttcaaatatgaaggcaattgct 5571504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 32633215 - 32633399
Alignment:
Q  53 cacaattgatcttacttctaatttcatacctgatgaaaactattggagcattaaatctttaataaaat---ttgactcaacagaagttcaaatcattgga 149  Q
    ||||| ||| ||||| | |||||||||||  |||||||||||| | | |||| | ||||||||||||    |||| |||| |||||||||||||||||||    
T  32633215 cacaaatgagcttacgtgtaatttcatactcgatgaaaactatcgcaccattcagtctttaataaaaaaaattgattcaatagaagttcaaatcattgga 32633314  T
Q  150 ctttggggtatgggaggcattggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaatatgatggcagttgct 234  Q
    |||||||| ||||| ||||| |||||||||||||||||  ||||| |||||||||||||||||||||| ||||| ||||||||||    
T  32633315 ctttggggcatggggggcataggtaagacaacccttgctgctgctttgtttcaaagggtctctttcaagtatgaaggcagttgct 32633399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 13164791 - 13164992
Alignment:
Q  12 gacatcatcagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttctaatttcatacctgatgaaaactattggagcattaaatctt 111  Q
    ||||| ||||||| |||| || ||||||||||||| |    | ||||||| ||||| | || ||||||||  |||||||| || ||||||||||||||||    
T  13164791 gacattatcagagttgtattaggaaaattaaatcaccggtacgcaattgaacttacatatagtttcatactcgatgaaaattactggagcattaaatctt 13164890  T
Q  112 taataaaatttgactcaacagaagttcaaatcattggactttggggtatgggaggcattggtaagacaacccttgccactgctatgtttcaaagggtctc 211  Q
    |||||||| |||| ||| |||||||||||||||||||| ||||||| ||||| ||||  || ||||||||||||||  |||| ||||||||||| |||||    
T  13164891 taataaaaattgattcatcagaagttcaaatcattggagtttggggaatggggggcacaggcaagacaacccttgctgctgccatgtttcaaagagtctc 13164990  T
Q  212 tt 213  Q
    ||    
T  13164991 tt 13164992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 12177430 - 12177318
Alignment:
Q  75 ttcatacctgatgaaaactattggagcattaaatctttaataaaatttgactcaacagaagttcaaatcattggactttggggtatgggaggcattggta 174  Q
    |||||||| |||||||||||||  |||||| |||| ||| ||||| | || |||| |||||||  ||  |||||| ||||||| ||||||||||| || |    
T  12177430 ttcataccagatgaaaactattcaagcattgaatcattattaaaagtagattcaagagaagttagaactattggaatttggggcatgggaggcataggaa 12177331  T
Q  175 agacaacccttgc 187  Q
    |||||||||||||    
T  12177330 agacaacccttgc 12177318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 12421858 - 12421746
Alignment:
Q  75 ttcatacctgatgaaaactattggagcattaaatctttaataaaatttgactcaacagaagttcaaatcattggactttggggtatgggaggcattggta 174  Q
    |||||||| |||||||||||||  |||||| |||| ||| ||||| | || |||| |||||||  ||  |||||| ||||||| ||||||||||| || |    
T  12421858 ttcataccagatgaaaactattcaagcattgaatcattattaaaagtagattcaagagaagttagaactattggaatttggggcatgggaggcataggaa 12421759  T
Q  175 agacaacccttgc 187  Q
    |||||||||||||    
T  12421758 agacaacccttgc 12421746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 12188751 - 12188592
Alignment:
Q  75 ttcatacctgatgaaaactattggagcattaaatctttaataaaatttgactcaacagaagttcaaatcattggactttggggtatgggaggcattggta 174  Q
    |||||||| |||||| ||||||  |||||| |||| ||  |||||  |||||||| |||||||  ||  |||||| ||||||| ||||||||||| || |    
T  12188751 ttcataccagatgaagactattcaagcattgaatcatttttaaaagatgactcaagagaagttagaactattggaatttggggcatgggaggcataggaa 12188652  T
Q  175 agacaacccttgccactgctatgtttcaaagggtctctttcaaatatgatggcagttgct 234  Q
    |||||||||||||  |||| || ||||| | ||| |||| || |||||| || |||||||    
T  12188651 agacaacccttgctgctgccatatttcagaaggtatcttccagatatgaaggtagttgct 12188592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 12433179 - 12433020
Alignment:
Q  75 ttcatacctgatgaaaactattggagcattaaatctttaataaaatttgactcaacagaagttcaaatcattggactttggggtatgggaggcattggta 174  Q
    |||||||| |||||| ||||||  |||||| |||| ||  |||||  |||||||| |||||||  ||  |||||| ||||||| ||||||||||| || |    
T  12433179 ttcataccagatgaagactattcaagcattgaatcatttttaaaagatgactcaagagaagttagaactattggaatttggggcatgggaggcataggaa 12433080  T
Q  175 agacaacccttgccactgctatgtttcaaagggtctctttcaaatatgatggcagttgct 234  Q
    |||||||||||||  |||| || ||||| | ||| |||| || |||||| || |||||||    
T  12433079 agacaacccttgctgctgccatatttcagaaggtatcttccagatatgaaggtagttgct 12433020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 14218 - 14004
Alignment:
Q  20 cagagctgtaataagaaaattaaatcaacaaagcacaattgatcttacttctaatttcatacctgatgaaaactattggagcattaaatctttaataaaa 119  Q
    ||||| |||| || ||||||||||||| ||| |||||| ||||||||| | |||||| |||| |||||||||||||||||||||| |||| |||||||||    
T  14218 cagagttgtattaggaaaattaaatcagcaatgcacaaatgatcttacatgtaattttatacttgatgaaaactattggagcattcaatcattaataaaa 14119  T
Q  120 tttgactcaacagaagttcaaatcattggactttggggtatgggaggcattggtaagacaacccttgccactgctatgtttcaaagggtctctttcaaat 219  Q
    ||||| ||| || ||||||||||||||||| ||||||||||||||||||  |||||||||||||||||  ||  | ||||||||||| ||||||||||||    
T  14118 tttgattcagcacaagttcaaatcattggaatttggggtatgggaggcacaggtaagacaacccttgcttctattctgtttcaaaggttctctttcaaat 14019  T
Q  220 atgatggcagttgct 234  Q
    |||| ||||| ||||    
T  14018 atgaaggcagctgct 14004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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