View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17176_low_29 (Length: 225)
Name: NF17176_low_29
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17176_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30354991 - 30354781
Alignment:
| Q |
1 |
tacatccgcaaggatcccataaccgttcataaaacaaataatggagcctatccaaccgattcaaaccccacctccacgacacnnnnnnnnaatcgcatcc |
100 |
Q |
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| T |
30354991 |
tacatccgcaaggatcccatgaccgttcataaaacaaacaatggagcctatccaaccgattcaaaccccacctccatgaca-ttttttttaatcgcatcc |
30354893 |
T |
|
| Q |
101 |
actatatccaaaggttttttgatcctatttgaaaataaattatccctcatttcttccgaaataagacataccccaatgaaccagacaaaccaaaatccct |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30354892 |
actatatccaaaggttctttgatcctatttgaaaataaattatccctcatttcttccgaaataagacataccccaatgaaccagacaaacgaaaatccct |
30354793 |
T |
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| Q |
201 |
tcctttgcttct |
212 |
Q |
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||||||| |||| |
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| T |
30354792 |
tcctttgtttct |
30354781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 30352280 - 30352226
Alignment:
| Q |
26 |
ttcataaaacaaataatggagcctatccaaccgattcaaaccccacctccacgac |
80 |
Q |
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||||||||||||| ||||| || ||| ||||||| ||||||||||||| |||||| |
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| T |
30352280 |
ttcataaaacaaaaaatggggcatattcaaccgactcaaaccccaccttcacgac |
30352226 |
T |
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