View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17176_low_3 (Length: 684)

Name: NF17176_low_3
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17176_low_3
NF17176_low_3
[»] chr4 (1 HSPs)
chr4 (18-659)||(45400029-45400673)


Alignment Details
Target: chr4 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 18 - 659
Target Start/End: Complemental strand, 45400673 - 45400029
Alignment:
Q  18 attggaccgttcttgatgtcagaggggagatagtagtttgtgtatgtgtgttctgaaataacactagnnnnnnn-agaggtgaaattatactatagttga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  45400673 attggaccgttcttgatgtcagaggggagatagtagtttgtgtatgtgtgttctgaaataacactagttttttttagaggtgaaattatactatagttga 45400574  T
Q  117 ttaatcacaaaaaatagtatataattgttatccatgagcttaacacaa--ttgcgcagggcagggttggaaatgtctataagtcatggaaacattactta 214  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45400573 ttaatcacaaaaaatagtatataattgttacccatgagcttaacacacagttgcgcagggcagggttcgaaatgtctataagtcatggaaacattactta 45400474  T
Q  215 tagtgccattcccaaatcaaagtttgacaaaaacaaaattgaacttattaaatcaacatctcacttattgaaaattttggcattgaattaatgtaatggt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45400473 tagtgccattcccaaatcaaagtttgacaaaaacaaaattgaacttattaaatcaacatctcacttattgaaaattttggcattgaattaatgtaatggt 45400374  T
Q  315 actttctggtcaatgttagcatgatgacatcatattcaaatctaacattacaccaaaacttcacattatgagactcagaagtcttaactagttttccttt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45400373 actttctggtcaatgttagcatgatgacatcatattcaaatctaacattacaccaaaacttcacattatgagactcagaagtcttaactggttttccttt 45400274  T
Q  415 atggcttgcatcttagtccatggaagaatacaaaaatgtgactacgcactacccactctaccgactccaatctctttaatccttctaattagacgggttt 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45400273 atggcttgcatcttagtccatggaagaatacaaaaatgtgactacgcactacccactctaccgactccaatctctttaatccttctaattacacgggttt 45400174  T
Q  515 ttccttttaatggtgtcactttctcttctttgaatttcctatcttaacttaattgcttttatttttattctagcatcatttatgccagactcactttttc 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  45400173 ttccttttaatggtgtcactttctcttctttgaatttcctatcttaacttaattgcttttatttttattctagtatcatttatgtcagactcactttttc 45400074  T
Q  615 tttacatatatttattacgtcacgtactattaacttcaatagctt 659  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  45400073 tttacatatatttatcacgtcacgtactattaacttcaatagctt 45400029  T

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