View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17176_low_30 (Length: 225)

Name: NF17176_low_30
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17176_low_30
NF17176_low_30
[»] chr8 (2 HSPs)
chr8 (11-223)||(28535739-28535951)
chr8 (13-223)||(11462863-11463073)
[»] chr1 (2 HSPs)
chr1 (11-208)||(22787555-22787752)
chr1 (13-152)||(6154204-6154342)
[»] chr3 (2 HSPs)
chr3 (11-223)||(26557342-26557554)
chr3 (10-99)||(2125587-2125676)
[»] chr5 (5 HSPs)
chr5 (11-223)||(9047619-9047831)
chr5 (44-206)||(17076845-17077007)
chr5 (13-152)||(424120-424259)
chr5 (13-124)||(18108454-18108565)
chr5 (14-124)||(25633701-25633811)
[»] chr6 (2 HSPs)
chr6 (11-138)||(16693390-16693517)
chr6 (40-159)||(10773969-10774088)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 28535951 - 28535739
Alignment:
Q  11 cacccacaactcgcagaaaaaatggcagaaaatacaaaagtgaacgtttataggcggcatacttaaacacaaaaaccactcgatcatgatgccgaaatat 110  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||    
T  28535951 cacccacaactcgcagaaaaaacggcagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaaccactcggtcatgatgccgaaatat 28535852  T
Q  111 acaacaagcaaaatgccagcagaagtatacccctgcatcacaaccgagctcaccacctagctgcaccaaaacaaaattctgcaggcaggaccaaaacagc 210  Q
    |||||||||||||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||| |    
T  28535851 acaacaagcaaaatgccaacagaagtataaccctacatcacaatcgagctcaccacctagctgcaccaaaacaaaattttgcaagcaggaccaaaacaac 28535752  T
Q  211 acttaacatcccc 223  Q
    |||||||| ||||    
T  28535751 acttaacagcccc 28535739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 11462863 - 11463073
Alignment:
Q  13 cccacaactcgcagaaaaaatggcagaaaatacaaaagtgaacgtttataggcggcatacttaaacacaaaaaccactcgatcatgatgccgaaatatac 112  Q
    |||||||||||  ||||| | |||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||    
T  11462863 cccacaactcgaggaaaagacggcagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaaccactcgatcatgatgccggaatatac 11462962  T
Q  113 aacaagcaaaatgccagcagaagtatacccctgcatcacaaccgagctcaccacctagctgcaccaaaacaaaattctgcaggcaggaccaaaacagcac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||    
T  11462963 aacaagcaaaatgccagcagaagtatacccctgcatcacaaccgaactcaccacttagctgcaccaaaacaaaattctgcaggcaggacgaaaacaacac 11463062  T
Q  213 ttaacatcccc 223  Q
    |||||| ||||    
T  11463063 ttaacagcccc 11463073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 22787555 - 22787752
Alignment:
Q  11 cacccacaactcgcagaaaaaatggcagaaaatacaaaagtgaacgtttataggcggcatacttaaacacaaaaaccactcgatcatgatgccgaaatat 110  Q
    |||||||||||||| ||||||| ||||||||||| |||||||| ||| ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||    
T  22787555 cacccacaactcgcggaaaaaacggcagaaaatataaaagtgaccgtatataggcggcacacttaaacaccaaaaccactcggtcatgatgccggaatat 22787654  T
Q  111 acaacaagcaaaatgccagcagaagtatacccctgcatcacaaccgagctcaccacctagctgcaccaaaacaaaattctgcaggcaggaccaaaaca 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  22787655 acaacaagcaaaatgccagcagaagtatacccctgcatcacaaccgagctcaccacctagctgcaccaaaacaaaattttgcaagcaggaccaaaaca 22787752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 6154204 - 6154342
Alignment:
Q  13 cccacaactcgcagaaaaaatggcagaaaatacaaaagtgaacgtttataggcggcatacttaaacacaaaaaccactcgatcatgatgccgaaatatac 112  Q
    |||||||||||| ||||||  || ||||||||||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  6154204 cccacaactcgcggaaaaac-ggtagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaaccactcgatcatgatgccgaaatatac 6154302  T
Q  113 aacaagcaaaatgccagcagaagtatacccctgcatcaca 152  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6154303 aacaagcaaaatgccagcagaagtatacccctgcatcaca 6154342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 26557554 - 26557342
Alignment:
Q  11 cacccacaactcgcagaaaaaatggcagaaaatacaaaagtgaacgtttataggcggcatacttaaacacaaaaaccactcgatcatgatgccgaaatat 110  Q
    ||||||||||| || ||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||    
T  26557554 cacccacaacttgcggaaaaaacggcagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaaccactcggtcatgatgccggaatat 26557455  T
Q  111 acaacaagcaaaatgccagcagaagtatacccctgcatcacaaccgagctcaccacctagctgcaccaaaacaaaattctgcaggcaggaccaaaacagc 210  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |    
T  26557454 acaacaagcaaaatgccagcagaagtacacccctgcatcacaaccgagctcaccacctagctgcaccaaaacaaaattttgcaagcaggatcaaaacaac 26557355  T
Q  211 acttaacatcccc 223  Q
    |||||||| ||||    
T  26557354 acttaacagcccc 26557342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 2125676 - 2125587
Alignment:
Q  10 acacccacaactcgcagaaaaaatggcagaaaatacaaaagtgaacgtttataggcggcatacttaaacacaaaaaccactcgatcatga 99  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||||| ||||||    
T  2125676 acacccacaactcgcggaaaaaacggcagaaaatacaaaagtgatcgtatataggcggcacacttaaacaccaaaaccactcggtcatga 2125587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 9047619 - 9047831
Alignment:
Q  11 cacccacaactcgcagaaaaaatggcagaaaatacaaaagtgaacgtttataggcggcatacttaaacacaaaaaccactcgatcatgatgccgaaatat 110  Q
    |||||||||||||| ||||||| | |||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||    
T  9047619 cacccacaactcgcggaaaaaacgacagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaaccactcggtcatgatgccggaatat 9047718  T
Q  111 acaacaagcaaaatgccagcagaagtatacccctgcatcacaaccgagctcaccacctagctgcaccaaaacaaaattctgcaggcaggaccaaaacagc 210  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| |    
T  9047719 acaacaagcaaaatgtcagcataagtatacccctgcatcacaaccgagctcaccacctagctgcaccaaaacaaaattttgcaagcagaaccaaaacaac 9047818  T
Q  211 acttaacatcccc 223  Q
    |||||||| ||||    
T  9047819 acttaacagcccc 9047831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 17077007 - 17076845
Alignment:
Q  44 acaaaagtgaacgtttataggcggcatacttaaacacaaaaaccactcgatcatgatgccgaaatatacaacaagcaaaatgccagcagaagtatacccc 143  Q
    |||||||||| ||| ||||||||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  17077007 acaaaagtgaccgtatataggcggcacacataaacaccaaaaccactcgatcatgatgccggaatatacaacaagcaaaatgccaacagaagtatacccc 17076908  T
Q  144 tgcatcacaaccgagctcaccacctagctgcaccaaaacaaaattctgcaggcaggaccaaaa 206  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17076907 tacatcacaaccgagctcaccacctagctgcaccaaaacaaaattctgcaggcatgaccaaaa 17076845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 424120 - 424259
Alignment:
Q  13 cccacaactcgcagaaaaaatggcagaaaatacaaaagtgaacgtttataggcggcatacttaaacacaaaaaccactcgatcatgatgccgaaatatac 112  Q
    ||||| |||||| ||||||| |||||||||||||||||||| ||  |||||| |||| |||||||||| |||||||||   |||||||||||||||||||    
T  424120 cccacgactcgcggaaaaaacggcagaaaatacaaaagtgaccgcatataggtggcacacttaaacaccaaaaccactatgtcatgatgccgaaatatac 424219  T
Q  113 aacaagcaaaatgccagcagaagtatacccctgcatcaca 152  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  424220 aacaagcaaaatgtcagcagaagtatacccctgcatcaca 424259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 18108454 - 18108565
Alignment:
Q  13 cccacaactcgcagaaaaaatggcagaaaatacaaaagtgaacgtttataggcggcatacttaaacacaaaaaccactcgatcatgatgccgaaatatac 112  Q
    |||||||||||| |||||||||| |||||||| |||||||| ||| ||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||    
T  18108454 cccacaactcgcggaaaaaatggtagaaaataaaaaagtgaccgtatataggcggcacacttaaacaccaaaaccactcggtcatgatgccggaatatac 18108553  T
Q  113 aacaagcaaaat 124  Q
    ||||||||||||    
T  18108554 aacaagcaaaat 18108565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 25633701 - 25633811
Alignment:
Q  14 ccacaactcgcagaaaaaatggcagaaaatacaaaagtgaacgtttataggcggcatacttaaacacaaaaaccactcgatcatgatgccgaaatataca 113  Q
    ||||||||||| ||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||| ||||||||||||| | ||||||||    
T  25633701 ccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgtatataggcggcacacttaaacaccaaaaccattcgatcatgatgctggaatataca 25633800  T
Q  114 acaagcaaaat 124  Q
    |||||||||||    
T  25633801 acaagcaaaat 25633811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 16693517 - 16693390
Alignment:
Q  11 cacccacaactcgcagaaaaaatggcagaaaatacaaaagtgaacgtttataggcggcatacttaaacacaaaaaccactcgatcatgatgccgaaatat 110  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||| |||||| |||| |||||||  | ||||||||||| ||||||||||| |||||    
T  16693517 cacccacaactcgcggaaaaaacggcagaaaatacaaaagtgaccgtatataggtggcacacttaaaacccaaaaccactcggtcatgatgccggaatat 16693418  T
Q  111 acaacaagcaaaatgccagcagaagtat 138  Q
    |||||| |||||||||||||||||||||    
T  16693417 acaacacgcaaaatgccagcagaagtat 16693390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 10773969 - 10774088
Alignment:
Q  40 aaatacaaaagtgaacgtttataggcggcatacttaaacacaaaaaccactcgatcatgatgccgaaatatacaacaagcaaaatgccagcagaagtata 139  Q
    ||||||||||| |  ||| |||||| || | || ||||||| ||||||||||  ||||||||||| |||||||||||||  ||||||| ||| ||| |||    
T  10773969 aaatacaaaaggggccgtatataggaggtacacctaaacaccaaaaccactcagtcatgatgccggaatatacaacaagtgaaatgccggcaaaagcata 10774068  T
Q  140 cccctgcatcacaaccgagc 159  Q
    ||||||||||||||||||||    
T  10774069 cccctgcatcacaaccgagc 10774088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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