View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17176_low_4 (Length: 654)
Name: NF17176_low_4
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17176_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 109 - 635
Target Start/End: Complemental strand, 22898668 - 22898144
Alignment:
| Q |
109 |
tatggctgccgaattgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcctatggctg |
208 |
Q |
| |
|
||||||||| || | ||| ||||||||| ||| ||| ||||| |||| |||| |||||||||||||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
22898668 |
tatggctgctgagtcgtttatgctcatgtttgctgattttatccatgtcttt-atgcacactttgttgaatttatgcatgacttttaatggctatggctg |
22898570 |
T |
|
| Q |
209 |
ctgagtcgtttatgctcatgtttgctgattttatccatgtcttgatgcacactttgttgaatttatgcatgacttttaatggatatggctgctgagnnnn |
308 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22898569 |
ctgagttttttatgctcatgtttgctgattttttccatgtctttatgcacactttgttgaatttatgcatgacttttaatggctatggctgctgagtttt |
22898470 |
T |
|
| Q |
309 |
nnnatgctcgaggacaggctaaatgattactatacacacttaaaacttttttacacacccttaaacattattacagtcctaaagttgaggtaaatgatta |
408 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
22898469 |
tt-atgcttgaggacaggctaaatgattactatacacacttaaaacttttttacacacccttaaacattattacagtcataaagttggggtaaatgatta |
22898371 |
T |
|
| Q |
409 |
ataaatacactttaaatctaataaacacactttatatctattaatacacacccttaaatatttaatactcacctaataaatttttaaataatgaagctgg |
508 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22898370 |
ataaacacactttaaatctaataaacacactttatatctattaatacacacccttaaatatttaatactcatctaataaatttttaaataatgaagctgg |
22898271 |
T |
|
| Q |
509 |
tgcagcagcatcaactcgaactattaataatgaagctggtgcagcgccatcaactcaggttgctggacctgaactaactaatactcaaccattaaagaag |
608 |
Q |
| |
|
||| ||||||||||||| |||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22898270 |
tgcggcagcatcaactcaaactatgattaatgaagctggtgcagcaccatcaactcaggttgctggacctgaactaactaatactcaaccattaaagaag |
22898171 |
T |
|
| Q |
609 |
agaaaggctaatgcaaatggtcctagg |
635 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
22898170 |
agaaaggctaatgcaaatggtcctagg |
22898144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 22898868 - 22898565
Alignment:
| Q |
1 |
gttaatagcattcaaagcccaagtgcaaggactgtagcaagtggaggagttaatgagcaaggagagcattgtaagtatattatgttgccttgtcatttgt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22898868 |
gttaatagcattcaaagcccaggtgcaaggactgtagcaagtggaggagttaatgaacaaggagagcattgtaagtatattatgttgccttgtcatttgt |
22898769 |
T |
|
| Q |
101 |
gtatattgtatggctgccgaattgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22898768 |
gtatactgtatggctgccgaattgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcc |
22898669 |
T |
|
| Q |
201 |
tatggctgctgagtcgtttatgctcatgtttgctgattttatccatgtcttgatgcacactttgttgaatttatgcatgacttttaatggatatggctgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22898668 |
tatggctgctgagtcgtttatgctcatgtttgctgattttatccatgtctttatgcacactttgttgaatttatgcatgacttttaatggctatggctgc |
22898569 |
T |
|
| Q |
301 |
tgag |
304 |
Q |
| |
|
|||| |
|
|
| T |
22898568 |
tgag |
22898565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 285
Target Start/End: Complemental strand, 15978588 - 15978446
Alignment:
| Q |
143 |
gagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcctatggctgctgagtcgtttatgctcatgtttgctgattttat |
242 |
Q |
| |
|
|||||||| |||| ||||||| || | ||| || | ||| |||| |||||||||| ||| |||| ||||| ||| ||||||||||||| ||| ||||| |
|
|
| T |
15978588 |
gagtttatccatgtctttgatacatattttattgagtttttgcacaatttttaatgtatatagctgatgagttgttgatgctcatgtttgttgagtttat |
15978489 |
T |
|
| Q |
243 |
ccatgtcttgatgcacactttgttgaatttatgcatgactttt |
285 |
Q |
| |
|
| |||| || ||||| |||||||| ||||||||||| |||| |
|
|
| T |
15978488 |
ctatgtttttgggcacattttgttgagtttatgcatgattttt |
15978446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 15978517 - 15978430
Alignment:
| Q |
122 |
ttgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcctatggctgct |
210 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| |||| ||||| |||||| | |||||||||||||||| |||| ||||| |||| |
|
|
| T |
15978517 |
ttgttgatgctcatgtttgttgagtttatctatgtttttg-ggcacattttgttgagtttatgcatgattttttatgcttatggatgct |
15978430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 229 - 635
Target Start/End: Complemental strand, 16301052 - 16300647
Alignment:
| Q |
229 |
tttgctgattttatccatgtcttgatgcacactttgttgaatttatgcatgacttttaatggatatggctgctgagnnnnnnnatgctcgaggacaggct |
328 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
16301052 |
tttgctgattttttccatgtctttatgcacactttgttgaatttatgcatgacttttaatggctatggctgctgagtttttt-atgctcaaggacaggct |
16300954 |
T |
|
| Q |
329 |
aaatgattactatacacacttaaaacttttttacacacccttaaacattattacagtcctaaagttgaggtaaatgattaataaatacactttaaatcta |
428 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16300953 |
aaatgattactataaacacttaaaacttttttacacacccttaaacattattacagtcctaaagttggggtaaatgattaataaatacactttaaatcta |
16300854 |
T |
|
| Q |
429 |
ataaacacactttatatctattaatacacacccttaaatatttaatactcacctaataaatttttaaataatgaagctggtgcagcagcatcaactcgaa |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
16300853 |
ataaacacactttatatctattaatacacacccttaaatatttaatactcacctaataaatttataaataatgaagctggtgcagcagcatcaactcaaa |
16300754 |
T |
|
| Q |
529 |
ctattaataatgaagctggtgcagcgccatcaactcaggttgctggacctgaactaactaatactcaaccattaaagaagagaaaggctaatgcaaatgg |
628 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16300753 |
ctatgaataatgaagctggtgcagcgccatcaactcaggttgctggacctgaactaactaatactcaaccattaaagaagagaaaggctaatgcaaatgg |
16300654 |
T |
|
| Q |
629 |
tcctagg |
635 |
Q |
| |
|
||||||| |
|
|
| T |
16300653 |
tcctagg |
16300647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 16307932 - 16307629
Alignment:
| Q |
1 |
gttaatagcattcaaagcccaagtgcaaggactgtagcaagtggaggagttaatgagcaaggagagcattgtaagtatattatgttgccttgtcatttgt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16307932 |
gttaataacattcaaagcccaagtgcaaggactgtagcaagtggaggagttaatgagcaaggagagcattgtaagtatattatgttgccttgtcatttgt |
16307833 |
T |
|
| Q |
101 |
gtatattgtatggctgccgaattgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16307832 |
gtatactgtatggctgccgaattgttgatgctaatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcc |
16307733 |
T |
|
| Q |
201 |
tatggctgctgagtcgtttatgctcatgtttgctgattttatccatgtcttgatgcacactttgttgaatttatgcatgacttttaatggatatggctgc |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
16307732 |
tatggctgctgagttgtttatgctcatgtttgctgattttatctatgtctttatgcacactttgttgaatttctgcatgacttttaatggctatggctgc |
16307633 |
T |
|
| Q |
301 |
tgag |
304 |
Q |
| |
|
|||| |
|
|
| T |
16307632 |
tgag |
16307629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 109 - 304
Target Start/End: Complemental strand, 16307732 - 16307538
Alignment:
| Q |
109 |
tatggctgccgaattgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcctatggctg |
208 |
Q |
| |
|
||||||||| || ||||| ||||||||| ||| ||| ||||| ||| |||| |||||||||||||| ||||| ||||||| |||||||| ||||||||| |
|
|
| T |
16307732 |
tatggctgctgagttgtttatgctcatgtttgctgattttatctatgtcttt-atgcacactttgttgaatttctgcatgacttttaatggctatggctg |
16307634 |
T |
|
| Q |
209 |
ctgagtcgtttatgctcatgtttgctgattttatccatgtcttgatgcacactttgttgaatttatgcatgacttttaatggatatggctgctgag |
304 |
Q |
| |
|
|||||| | |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
16307633 |
ctgagttttgtatgctcatgtttgctgattttttccatgtctttatgcacactttgttgaatttatgcatgacttttaatggctatagctgctgag |
16307538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 128 - 304
Target Start/End: Complemental strand, 16307622 - 16307447
Alignment:
| Q |
128 |
atgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcctatggctgctgagtcgtttatgctcat |
227 |
Q |
| |
|
||||||||| ||| ||| ||| | |||| |||| |||||||||||||| ||||||||||||| |||||||| |||| |||||||||| | ||||||||| |
|
|
| T |
16307622 |
atgctcatgtttgctgattttttccatgtcttt-atgcacactttgttgaatttatgcatgacttttaatggctatagctgctgagttttgtatgctcat |
16307524 |
T |
|
| Q |
228 |
gtttgctgattttatccatgtcttgatgcacactttgttgaatttatgcatgacttttaatggatatggctgctgag |
304 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16307523 |
atttgctgattttttccatgtctttatgcacactttgttgaatttatgcatgacttttaatggctatggctgctgag |
16307447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 16301028 - 16300964
Alignment:
| Q |
162 |
atgcacactttgttaaatttatgcatgatttttaatgcctatggctgctgagtcgtttatgctca |
226 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |||||||||| |
|
|
| T |
16301028 |
atgcacactttgttgaatttatgcatgacttttaatggctatggctgctgagttttttatgctca |
16300964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 16307498 - 16307436
Alignment:
| Q |
162 |
atgcacactttgttaaatttatgcatgatttttaatgcctatggctgctgagtcgtttatgct |
224 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |||||||| |
|
|
| T |
16307498 |
atgcacactttgttgaatttatgcatgacttttaatggctatggctgctgagttttttatgct |
16307436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 19975226 - 19974991
Alignment:
| Q |
1 |
gttaatagcattcaaagcccaagtgcaaggactgtagcaagtggaggagttaatgagcaaggagagcattgtaagtatattatgttgccttgtcatttgt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19975226 |
gttaatagcattcaaagcccaggtgcaaggactctagcaagtggaggagttaatgagcaaggagagcattgtaagtatattatgttgccttgtcatttgt |
19975127 |
T |
|
| Q |
101 |
gtatattgtatggctgccgaattgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19975126 |
gtatattgtatggctgccgaaatgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcc |
19975027 |
T |
|
| Q |
201 |
tatggctgctgagtcgtttatgctcatgtttgctga |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
19975026 |
tatggctgctgagtcgtttatgctcatgtttgctga |
19974991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 19975099 - 19975014
Alignment:
| Q |
220 |
atgctcatgtttgctgattttatccatgtctt-gatgcacactttgttgaatttatgcatgacttttaatggatatggctgctgag |
304 |
Q |
| |
|
||||||||| ||| ||| ||||| |||| ||| ||||||||||||||| ||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
19975099 |
atgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcatgatttttaatgcctatggctgctgag |
19975014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 14085737 - 14085690
Alignment:
| Q |
128 |
atgctcatgcttgttgagtttattcatggctttgatgcacactttgtt |
175 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||||||||| |||||||| |
|
|
| T |
14085737 |
atgcttatgcttgttgagtttatccatgtctttgatgcatactttgtt |
14085690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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