View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17176_low_5 (Length: 635)
Name: NF17176_low_5
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17176_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 212 - 622
Target Start/End: Original strand, 53034009 - 53034419
Alignment:
| Q |
212 |
cacgtacatttaacacttgtacatctaattatagatctgcacatgattgggggacaacacacacggtatgctcaaattatttataattatatcaaccgtt |
311 |
Q |
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| T |
53034009 |
cacgtacatttaacacttgtacatctaattatagatctgcacatgattgggggacaacacacacggtatgctcaaattattgataattatatcaaccgct |
53034108 |
T |
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| Q |
312 |
gattttctactttgaacaggaatatgttccaaaacactgtggtgtggctccaaagctaagctgggaaatggagcaacagttagtcaacacagcaaagtta |
411 |
Q |
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| T |
53034109 |
gattttctactttgaacaggaatatgttccaaaacactgtggtgtggctccaaagctaagctgggaaatggagcaacagttagtcaacacagcaaagtta |
53034208 |
T |
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| Q |
412 |
gatatttctcgttgactatattaatccacaattatactaatgcaccgtcaaggaccctacattttagtatttagccacaacccgtatagatgagtaagtt |
511 |
Q |
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| T |
53034209 |
gatatttctcgttgactatattaatccacaattatactaatgcaccgtcaaggaccctacattttagtatttagccacaacccgtatagatgagtaagtt |
53034308 |
T |
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| Q |
512 |
tcacagattaattggacgaccaatatttatagtccttttaatttgtttagttatggatttaaatttatggttcatgctcaagatttcctgtattagttct |
611 |
Q |
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| T |
53034309 |
tcacagattaattggacgaccaatatttatagtccttttaatttgtttagttatggatttaaatttatggttcatgttcaagatttcctgtattagttct |
53034408 |
T |
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| Q |
612 |
tgcttttgttc |
622 |
Q |
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| T |
53034409 |
tgcttttgttc |
53034419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 53033826 - 53033947
Alignment:
| Q |
17 |
actacaattcactactggcattcatggacaaagctgtggatgaaggttttgtaacaccagctgcccgtcacattattgtatctgcccacactgcccaaga |
116 |
Q |
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| T |
53033826 |
actacaattcactactggcattcatggacaaagctgtggatgaaggttttgtaacaccagctgcccgtcacattattgtatctgcccacactgcccaaga |
53033925 |
T |
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| Q |
117 |
cctcatgtgcaaacttgaggta |
138 |
Q |
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| T |
53033926 |
cctcatgtgcaaacttgaggta |
53033947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 7885425 - 7885514
Alignment:
| Q |
49 |
gctgtggatgaaggttttgtaacaccagctgcccgtcacattattgtatctgcccacactgcccaagacctcatgtgcaaacttgaggta |
138 |
Q |
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| T |
7885425 |
gctgtagatgaaggtttcataacacaggctgctcgtcatattattgtgtctgcacatactgctcaggacctcatgtgcaagcttgaggta |
7885514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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