View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17176_low_6 (Length: 628)
Name: NF17176_low_6
Description: NF17176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17176_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 2e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 436 - 615
Target Start/End: Original strand, 23144875 - 23145054
Alignment:
| Q |
436 |
ggaagtgtatctagtgttgagtgaactggagttagatgttgtggaatcggctaagaatgtttgaaatccattaatccctcagaaggtatcggtgttaatt |
535 |
Q |
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| T |
23144875 |
ggaagtgtatctagtgttgagtgaactggagttagatgttgtggaatcggctaagaatgtttgaaatccattaatccctcagaaggtatcggtgttgatt |
23144974 |
T |
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| Q |
536 |
gggaggcttttgcaaaataggcttcccactaaagataatctttgtttgaaagggataagagataatgcatctacttcttg |
615 |
Q |
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| T |
23144975 |
gggaggcttttgcaaaataggcttcccactaaagataatctttgtttgaaagggataagagataatgcatctacttcttg |
23145054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 31 - 288
Target Start/End: Original strand, 23144440 - 23144696
Alignment:
| Q |
31 |
gtacaacttagtttattaatttggaaaggagcatttacatttaggttttatggcattgccgtaatcgatgagctggttggtgtaatttttaatcgccccc |
130 |
Q |
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| T |
23144440 |
gtacaaattagtttattaatttggaaaggagcatttacatttaggttttatggcactgccataatcgaggagctggttggtgtaatttgtaatagccccc |
23144539 |
T |
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| Q |
131 |
acaacacatcgccctttaattccagttttctgatctttacaatcccctgaaagtgtaatcgacaagaaatttaatcttgcaaagcatattattcacaagg |
230 |
Q |
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| T |
23144540 |
acaacacatcgccccttaattccagttttctgatctttacaatcccctgaaagttaaatcgacaagaagtttaatcttgcaaagcatattattaataagg |
23144639 |
T |
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| Q |
231 |
agaactaagctagtgacatctttaactcatggttcaattagttcaatgaatttgacta |
288 |
Q |
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| T |
23144640 |
ag-attagactagtggcatcttcgactcatggttcgattagttcagtgaattttacta |
23144696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 23144774 - 23144848
Alignment:
| Q |
368 |
ctgttgaatgaactatggttgaactcattaaaccttgatttaatctagttaaggaggcgttgatcgttggaagtg |
442 |
Q |
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| T |
23144774 |
ctgttgaatgaactatggttgaactcattaaaccttgatttaatctagttaaggaggcgttgatcgttggaagtg |
23144848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 23135419 - 23135471
Alignment:
| Q |
129 |
ccacaacacatcgccctttaattccagttttctgatctttacaatcccctgaa |
181 |
Q |
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| T |
23135419 |
ccacgacacatcgcccctttgttccagttttatgatctatacaatcccctgaa |
23135471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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