View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17177_high_5 (Length: 287)
Name: NF17177_high_5
Description: NF17177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17177_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 32552120 - 32552367
Alignment:
| Q |
11 |
gatgaactagctatgcatggtatgatggtactaactttaattgggagagnnnnnnntggtgaaattacttcttatgaggcactaggcatggtactcgacg |
110 |
Q |
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| T |
32552120 |
gatgaactagctatgcatggtgtgatggtactaactttaattgggagagaaaaaaatggtgaaattacttcttatgaggcactaggcatggtactcgacg |
32552219 |
T |
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| Q |
111 |
agatggtccaagaggtaaatatgattaatatatgtttgattattaatcggtatgaaagcttaattaaacacttgaaaataagacgcacttatgaatattc |
210 |
Q |
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| T |
32552220 |
agatggtccaagaggtaaatatgattaatatatgtttgataattaatcggtatgaaagcttaattaaacatttgaaaataagacgcacttatgaatagtc |
32552319 |
T |
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| Q |
211 |
tatattttttagataacgaaatgacagataattattgaaactcacaca |
258 |
Q |
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| T |
32552320 |
tatattttttagataacgatatgacagataattattgaaactcacaca |
32552367 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 27878305 - 27878351
Alignment:
| Q |
86 |
gaggcactaggcatggtactcgacgagatggtccaagaggtaaatat |
132 |
Q |
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| T |
27878305 |
gaggtacttggcctggtactcaacgagatggtccaagaggtaaatat |
27878351 |
T |
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