View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17177_high_6 (Length: 283)
Name: NF17177_high_6
Description: NF17177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17177_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 4705469 - 4705301
Alignment:
| Q |
10 |
gaaagagatcgacaataaactattgttcattgcaaaacaatagtaaaatgccgtttgacactttttaaaaaggacggtttcgtaaaatacactccatcag |
109 |
Q |
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| T |
4705469 |
gaaagagatcgacaataaactattgttcattgcaaaacaatagtaaactgccttttgacactttttaaaaaggacggtttcgtaaaatacactccatccg |
4705370 |
T |
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| Q |
110 |
tctctatattttagaagtcatagccgtcccgtgtcggtgtcctaagtgtaatggagtttttgtgtttaa |
178 |
Q |
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| T |
4705369 |
tctctatattttagaagtcatagccgtcccgtgtcggtgtcctaagtgtaatggagtttttgtgtttaa |
4705301 |
T |
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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 4705179 - 4705135
Alignment:
| Q |
225 |
aagaacaacactataagcactatatgtaaattttatccttcatag |
269 |
Q |
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| T |
4705179 |
aagaacaacactataagcactatatgtaagttttatccttcatag |
4705135 |
T |
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