View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17177_low_1 (Length: 636)
Name: NF17177_low_1
Description: NF17177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17177_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 89 - 631
Target Start/End: Complemental strand, 45104478 - 45103936
Alignment:
| Q |
89 |
aaaataaaactcacatgaatttcatcatccaatnnnnnnngtatcaaaaagaatgtctagtattacttaattgtcacgccatcataatgggataactaaa |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45104478 |
aaaataaaactcacatgaatttcatcatccaattaaaaaagtatcaaaaagaatgtctagtattacttaattgtcacgccatcataatgggataactaaa |
45104379 |
T |
|
| Q |
189 |
agcaatctgcacaaaatatgtgcatggtaatatatatttgaccattgtggtatatatgtattgaggtgtccattgaattctcgacaagacatcattctgc |
288 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45104378 |
agcaatctgcacaaaatatgtgcatggtcatatatatttgaccattgtggtatatatgtattgaggtgtccattgaattctcgacaagacatcattctgc |
45104279 |
T |
|
| Q |
289 |
taggattatgttgctcctcttaatcagttcttaatcttcatgaatgttcagtttatttgagtctcaatttaaataggaagggccataaactagttgatct |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45104278 |
taggattatgttgctcctcttaatcagttcttaatcttcatgaattttcagtttatttgagtctcaatttaaataggaagggccataaactagttgatct |
45104179 |
T |
|
| Q |
389 |
agcttttatagataaatacattccttagaccaaaagaaaatacagttatgggaacaacattattctgattaattctggttattccgttttacccttttca |
488 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45104178 |
agcttttatagataaatatattccttagaccaaaagaaaatacagttatgggaacaacattattctgattaattctggttattccgttttacccttttca |
45104079 |
T |
|
| Q |
489 |
gaacactcactcatgaggtttttgtcctttcttatctcaaaagccattaaaaaattggcaacatgaacatgatatagtatactttaacagaacttccact |
588 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45104078 |
gaacactcactcatgagctttttgtcctttcttatctcaaaagccattaaaaaattggcaacatgaacatgatatagtatactttaacagaacttccact |
45103979 |
T |
|
| Q |
589 |
atgacttattaataaatatatagtaacttgcacctttgcttct |
631 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
45103978 |
atgacttattaataaatatatagtaacttgcacttttgattct |
45103936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 45104525 - 45104483
Alignment:
| Q |
16 |
aaattggcaaaaataaagtctcatgtaaataaacttgtaatct |
58 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
45104525 |
aaattggcaaaaataaagtctcatgaaaataaacttgcaatct |
45104483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University