View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17177_low_8 (Length: 223)
Name: NF17177_low_8
Description: NF17177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17177_low_8 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 16163049 - 16162827
Alignment:
| Q |
1 |
ataaatcactattacattttttcagattattatttttcaatataatctataacttaaacatgattattctagagttgaagtaaacatttaattacttaaa |
100 |
Q |
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| T |
16163049 |
ataaatcactattacattttttcatattattatttttcaatataatctataacttaaacatgattattctagagttgaagtaaacatttaattacttaaa |
16162950 |
T |
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| Q |
101 |
tctgatataacctacattggtggtcttcgtaattgattcaaccatcaagggaacaatttctcgcagttctgtaatagttttagaaatatgtnnnnnnnca |
200 |
Q |
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| T |
16162949 |
tttgatataacctacattggtggtcttcgtaattgattcaacaatcaagggaacaatttctcgcagttctgtaatagttttagaaatatgtaaaaaaaca |
16162850 |
T |
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| Q |
201 |
tcatttccaccaatctctcccac |
223 |
Q |
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|||||||||||||| |||||||| |
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| T |
16162849 |
tcatttccaccaatttctcccac |
16162827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 31252249 - 31252106
Alignment:
| Q |
80 |
gtaaacatttaattacttaa-atctgatataacctacattggtggtcttcgtaattgattcaaccatcaagggaacaatttctcgcagttctgtaatagt |
178 |
Q |
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| T |
31252249 |
gtaaacatttaattacttaagatttg-tataacatacattggtggtatttttgattgattcaaccatcaaaggaactttctctcgtagttctgtaatagt |
31252151 |
T |
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| Q |
179 |
tttagaaatatgtnnnnnnncatcatttccaccaatctctcccac |
223 |
Q |
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| T |
31252150 |
tttagaaagatgataaaaaatatcatttccaccaatctctcccac |
31252106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 13003337 - 13003480
Alignment:
| Q |
80 |
gtaaacatttaattacttaa-atctgatataacctacattggtggtcttcgtaattgattcaaccatcaagggaacaatttctcgcagttctgtaatagt |
178 |
Q |
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| T |
13003337 |
gtaaacatttaattacttaagatttg-tataacatacattggtggtatttttgattgattcaaccatcaaaggaactttctctcgtagttctttaatagt |
13003435 |
T |
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| Q |
179 |
tttagaaatatgtnnnnnnncatcatttccaccaatctctcccac |
223 |
Q |
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| T |
13003436 |
tttagaaagatgataaaaaatatcatttccaccaatctctcccac |
13003480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 88 - 186
Target Start/End: Complemental strand, 27206305 - 27206206
Alignment:
| Q |
88 |
ttaattacttaaatctgatataacctacattggtggtcttcgt-aattgattcaaccatcaagggaacaatttctcgcagttctgtaatagttttagaaa |
186 |
Q |
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| T |
27206305 |
ttaattgcttaaatttggtataacatacattggtggtattttttaattgactcaacgatcaagggaaccatctctcgcagttctgtaatagttttagaaa |
27206206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 31094134 - 31094274
Alignment:
| Q |
83 |
aacatttaattacttaaatctgatataacctacattggtggtcttcgtaattgattcaaccatcaagggaacaatttctcgcagttctgtaatagtttta |
182 |
Q |
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||||||||||||||||| | | |||||| |||| ||||||| || | ||||| ||||| ||||||||||| || ||| ||||||||||||||||||| |
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| T |
31094134 |
aacatttaattacttaagttttgtataacatacaatggtggtatttttgattgaatcaactatcaagggaactatctcttgcagttctgtaatagttttg |
31094233 |
T |
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| Q |
183 |
gaaatatgtnnnnnnncatcatttccaccaatctctcccac |
223 |
Q |
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||| ||| |||||||||||||||||||||||| |
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| T |
31094234 |
aaaagatggtaaaaaatatcatttccaccaatctctcccac |
31094274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 27229004 - 27228906
Alignment:
| Q |
43 |
taatctataacttaaacatgattattctagagttgaagtaaacatttaattacttaaatctgatataacctacattggtggtcttcgtaattgattcaa |
141 |
Q |
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| T |
27229004 |
taatctataactcaaaaagaattattatacaattgaagaaaacatttaattatttagatttgatataacatacatttgtggtagttgtaattgtttcaa |
27228906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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