View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17178_high_3 (Length: 473)
Name: NF17178_high_3
Description: NF17178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17178_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 47 - 463
Target Start/End: Complemental strand, 32305581 - 32305164
Alignment:
| Q |
47 |
taagtgcaattcatttatgaagaattcagagactactataattgcacataatatgg-aagacagcagcatgagtaataccaatagtaaagagctttaatg |
145 |
Q |
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| T |
32305581 |
taagtgcaattcatttatgaagaattcagatactactataattgcacataatatgggaagacagcagcatgagtaataccaatagtaaagagctttaatg |
32305482 |
T |
|
| Q |
146 |
agagttattaccttcttccaccaaccgttgcaaagaatctgctgctgcgttttttaaccaaaccattgctgaagttggtgagcttcaactccctgcataa |
245 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32305481 |
agagttagtaccttcttccaccaaccgttgcatagaatctgctgctgcgttttttaaccaaaccattgctgaagttggtgagcttcaactccctgcataa |
32305382 |
T |
|
| Q |
246 |
aagattgaaagtagtacttatcaatctttatctaaagacaagcctatatagaacataatacttatattaaccaagtatatgtagaattattgtttggagg |
345 |
Q |
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| T |
32305381 |
aagattgaaagtagtacttatcaatctttatctaaagacaagcctatatagaacacaatacttatattaaccaagtatatgtagaattattgtttggagg |
32305282 |
T |
|
| Q |
346 |
tttgaaattaaaaaatgatgaatattagaatatattgaacctggctagtgttctgagcatgatggtgagattgatcaagatctgattgtgagggaagaaa |
445 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32305281 |
tttgaaattaaaaaataatgaatattagaatatattgaacctggctagagttctgagcatgatggtgagattgatcaagatctgattgtgagggaaaaaa |
32305182 |
T |
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| Q |
446 |
gaagagtgttcacctttg |
463 |
Q |
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|||||||||| ||||||| |
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| T |
32305181 |
gaagagtgttgacctttg |
32305164 |
T |
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