View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17178_high_9 (Length: 228)
Name: NF17178_high_9
Description: NF17178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17178_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 40322320 - 40322225
Alignment:
| Q |
1 |
gagacgactcgtcgattaagccatttactctt--aatacactctcaactactctttctttgttcactctttctgacttcaataacagtggctttcg |
94 |
Q |
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| T |
40322320 |
gagacgactcgtcgattaagccatttactctttcaatacactctcaactactctttctttgttcactctttctgacttaaataacagtggctttcg |
40322225 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 40322143 - 40322109
Alignment:
| Q |
177 |
gtacataatcaaatgaatgaacgggatgtgtttat |
211 |
Q |
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| T |
40322143 |
gtacataatcaaatgaatgaacgagatgtgtttat |
40322109 |
T |
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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 31071109 - 31071007
Alignment:
| Q |
1 |
gagacgactcgtcgattaagccatttactctt---------aatacactctcaactactctttctttgttcactctttctgacttcaataacagtggctt |
91 |
Q |
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| T |
31071109 |
gagacgactggtcgattaagccatttactctttcaagtttcaatacactctcaactactctttctttgttcactctttctgactataataacagccgctt |
31071010 |
T |
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| Q |
92 |
tcg |
94 |
Q |
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||| |
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| T |
31071009 |
tcg |
31071007 |
T |
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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 14401169 - 14401117
Alignment:
| Q |
37 |
cactctcaactactctttctttgttcactctttctgacttcaataacagtggc |
89 |
Q |
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| T |
14401169 |
cactctcaactgctctctctttgttcactctttctgacttcaataacagtggc |
14401117 |
T |
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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 32572393 - 32572315
Alignment:
| Q |
15 |
attaagccatttactctt--aatacactctcaactactctttctttgttcactctttctgacttcaataacagtggctt |
91 |
Q |
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||||||||||||| |||| ||| | ||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32572393 |
attaagccatttaatctttcaattctctctcaagtgctctttctttgttcactctttctaacttcaataacagtggctt |
32572315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 32572229 - 32572195
Alignment:
| Q |
177 |
gtacataatcaaatgaatgaacgggatgtgtttat |
211 |
Q |
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| T |
32572229 |
gtacataatcaaatgaatgaacgagatgtgtttat |
32572195 |
T |
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