View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17178_low_1 (Length: 563)
Name: NF17178_low_1
Description: NF17178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17178_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 171 - 550
Target Start/End: Complemental strand, 26627415 - 26627016
Alignment:
| Q |
171 |
ccaatgagtaatactacataagtaaatacaagacatacaagtttggtttaattgctctaaaaaagtataataagagtttggtttatttctttttgacaac |
270 |
Q |
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| T |
26627415 |
ccaatgagtaatactacatatttaaatacaagacatacaagtttggtttaattgctctaaaaaagtataataagagtttggtttatttctttttgacaac |
26627316 |
T |
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| Q |
271 |
tgtt-----------------atcacatgcacataagagtttcgaannnnnnnnaaaacatataattagtgctaacaaacaaattagattaaggaaaatg |
353 |
Q |
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| T |
26627315 |
tgttttgctcaaaaaactgttatcacatgcacataagagtttcgaattttttttaaaatatataattagtgctgacaaacaaattagaataaggaaaatg |
26627216 |
T |
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| Q |
354 |
ttaatatgtgtttggacggacatgtttttatttgagaaataaaacttattatataactagagtacactc---ttatcttcattaacatgggaaataaggg |
450 |
Q |
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| T |
26627215 |
ttaacatgtgtttggacggacatgtttttatttgagaaataaaacttattatataactagagtacactcttattatcttcattaacatgggaaataaggg |
26627116 |
T |
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| Q |
451 |
accatgattgcatgatgtaggcatttcatgcagtttcacacggcaaacgattttaatcgttgatttaagatctgatggtttttattatgcagtcaaaaat |
550 |
Q |
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| T |
26627115 |
atcaggatcgcctgatgtaggcatttcatgcagtttcacacggcaaacgattttaatcgttgatttaaaatctgatggtttttattatgcaattaaaaat |
26627016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 26627572 - 26627456
Alignment:
| Q |
14 |
aggtagctgtaatctgaatgctagggttttgaataaagatgattttcagaaaaacgatcaagatttgcagtaaaatgacgagtttacttcaaacactaaa |
113 |
Q |
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| T |
26627572 |
aggtagctgtaatctaaatgctagggttttgaataaagatgatttttagaaaaatgatcaagatttgcattaaaatgacgagtttacttcaaacactaaa |
26627473 |
T |
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| Q |
114 |
atgacataccttatccc |
130 |
Q |
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| T |
26627472 |
atgacataccttatccc |
26627456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 30072851 - 30072913
Alignment:
| Q |
15 |
ggtagctgtaatctgaatgctagggttttgaataaagatgattttcagaaaaacgatcaagat |
77 |
Q |
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| T |
30072851 |
ggtagttgtaatccaaatgctagggttttgaataaagatgattgtcagaaaaacgatcaagat |
30072913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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