View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17178_low_2 (Length: 488)
Name: NF17178_low_2
Description: NF17178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17178_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 51 - 471
Target Start/End: Original strand, 50528452 - 50528880
Alignment:
| Q |
51 |
tttgcaatcgcagtgatttttacaaaattacaatggcaccctaattttgttgaagctataaattatagtttttgctaactataagatacacactcaatcg |
150 |
Q |
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| T |
50528452 |
tttgcattcgcagtgatttttacaaaattacactggcaccctaattttgttgaagctataaattatagtttttgctaactataagatacacactcaatcg |
50528551 |
T |
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| Q |
151 |
gcttcataatgaaggtgacaatgtggagagctacactgaacccattcacactaatgaggaaacataaaatcttatcacaatccagcagaataactacaca |
250 |
Q |
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| T |
50528552 |
gcttcataatgaaggtgacaatgtggagagctacactgaacccattcacactaatgaggaaacataaaatcttatcacaatccagcagaataactacaca |
50528651 |
T |
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| Q |
251 |
aatcccctgatcaaatctcagccagaggctatattgttgaagtgggtccctttcctttgtgaaagattgtgaataccattcagaaaacactaatcccaga |
350 |
Q |
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| T |
50528652 |
aatcccctgatcaaatctcagccagaggctatattgttgaagtgggtccttttcctttgtgaaagattgtgaataccattcagaaaacactaatcccaga |
50528751 |
T |
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| Q |
351 |
caatattcacatcaca----ccatccacacacgttgccaaggaattaaaaacacagcaatcaaaaaacata----tacttacttagacatgaaaaacctt |
442 |
Q |
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| T |
50528752 |
caatattcacatcacaccatccatccacacacgttgccaaggaattaaaaacacagcaatcaaaaaacatatacttacttacttagacatgaaaaacctt |
50528851 |
T |
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| Q |
443 |
atataattaagaggaagcaagcacattgg |
471 |
Q |
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| T |
50528852 |
atataattaagaggaagcaagcacattgg |
50528880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 50528370 - 50528410
Alignment:
| Q |
11 |
aatactaaatctctatcaaaagaggtaccacatttggtgct |
51 |
Q |
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| T |
50528370 |
aatactaaatctctatcaaaagaggtaccacatttggtgct |
50528410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 124
Target Start/End: Complemental strand, 45608406 - 45608376
Alignment:
| Q |
94 |
attttgttgaagctataaattatagtttttg |
124 |
Q |
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| T |
45608406 |
attttgttgaagctataaattatagtttttg |
45608376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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