View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17178_low_4 (Length: 452)
Name: NF17178_low_4
Description: NF17178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17178_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 38942710 - 38943138
Alignment:
| Q |
1 |
gttttccttttcaaaaaactttcctgaatctacttctacnnnnnnnnctcaactgaatctacacacacaggaaatggcttcatagtaaaaagaatagaca |
100 |
Q |
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| T |
38942710 |
gttttccttttcaaaaagctttcctgaatctacttgtacctaaaaaactcaactgaatctacacacagaggaaatggcttcagagtaaaaagaatagaca |
38942809 |
T |
|
| Q |
101 |
atcacaacaacctcaacaattcatactatcacaataatctcatctccctttagttgtacacaatcacttcccgttccaaattaccctgcaattcaatcaa |
200 |
Q |
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| T |
38942810 |
atgacaacaacctcaacaattcatactaccacaataatcccacctcc-tttagttgtacacaatcacttcccattccaaattaccctgcaattcaatcaa |
38942908 |
T |
|
| Q |
201 |
ccacccaaccacagtcatattcataactctcattcctactaaattccttcaaccaatccattaacagttgcacttacaataaaagttccatcgtcaggta |
300 |
Q |
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| T |
38942909 |
ccacccaaccacagtcatattcataactctcattcctactaaattccttcaaccaatccattaacagttgcacttacaataaaagttccatcgtcaggta |
38943008 |
T |
|
| Q |
301 |
tatcagtcagctgagcaatggttttcttcgcacatacaattcgcaaatacacttcatcaaaagacgaccttacacggggaccaagtatgggaacagtctt |
400 |
Q |
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| T |
38943009 |
tatcagtcagctgagcaatggttttctttg--catacaa-tcgctaaaacacttcatcaaaagacgaacttacacggggagcaagtatgggaacagtctt |
38943105 |
T |
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| Q |
401 |
ggatgtctcaactccatcaaagcccacccagaa |
433 |
Q |
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| T |
38943106 |
ggatgtctcaactccatcaaagcccacccagaa |
38943138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 13724013 - 13723893
Alignment:
| Q |
53 |
ctgaatctacacacacaggaaatggcttcatagtaaaaagaatagacaatcacaacaacctcaacaattcatactat--cacaataatctcatctccctt |
150 |
Q |
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||||||||| | ||||||||||||||||| | | |||||| ||| ||||| ||||||||||| | |||||| || |||||||| |||||||| || |
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| T |
13724013 |
ctgaatctaaaaacacaggaaatggcttcttggaaaaaagcatacacaatgttaacaacctcaatagctcatacaattctacaataatttcatctccttt |
13723914 |
T |
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| Q |
151 |
tagttgtacacaatcacttcc |
171 |
Q |
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| T |
13723913 |
tagctcaacacaatcacttcc |
13723893 |
T |
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