View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17178_low_6 (Length: 373)
Name: NF17178_low_6
Description: NF17178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17178_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Original strand, 39751104 - 39751459
Alignment:
| Q |
15 |
actttgtaagctacttttttaaaatatatgtttttcttccccttatcttcttctaaggaaattatattataattgatttactttatatacaacttttgcg |
114 |
Q |
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| T |
39751104 |
actttgtaagctacttttttaaaatatatgtttttcttccccttatcttcttctaaggaaattatattataattgatttactttatatacaacttttgcg |
39751203 |
T |
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| Q |
115 |
caaaaataaaattacattatcaattaattataactatatgatcataatcaatttgtgcggaatg-----aaatgaaatagatacgagtgttgtaccaccg |
209 |
Q |
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| T |
39751204 |
caaaaataaaattacattatcaattaattataactatatgatcataatcaatttgtgcggaatgaaatgaaatgaaatagatacgagtgttgtaccaccg |
39751303 |
T |
|
| Q |
210 |
cttatatacgctgtaatgggaacatcaagagaaatagcaattggtcctgtggccgtggtttcgttgctgttatcatcgatggttcaaaaattagtagacc |
309 |
Q |
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| T |
39751304 |
cttatatacgctgtaatgggaacatcaagagaaatagcaattggtcctgtggccgtggtttcgttgctgttatcatcgatggttcaaaaattagtagacc |
39751403 |
T |
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| Q |
310 |
cttctactgatccaattggttatacaaagctcatttttcttgccacaccctttgct |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39751404 |
cttctactgatccaattggttatacaaagctcatttttcttgccacactctttgct |
39751459 |
T |
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