View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17178_low_7 (Length: 240)

Name: NF17178_low_7
Description: NF17178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17178_low_7
NF17178_low_7
[»] chr8 (8 HSPs)
chr8 (19-240)||(3232039-3232261)
chr8 (132-212)||(29796579-29796658)
chr8 (136-196)||(32902459-32902519)
chr8 (131-193)||(8863354-8863415)
chr8 (130-212)||(18141651-18141732)
chr8 (130-199)||(5689101-5689170)
chr8 (131-161)||(7597433-7597463)
chr8 (131-187)||(11712284-11712340)
[»] chr3 (6 HSPs)
chr3 (131-198)||(40519468-40519535)
chr3 (133-198)||(2075339-2075404)
chr3 (130-212)||(44700748-44700829)
chr3 (130-212)||(29196657-29196738)
chr3 (130-198)||(9666738-9666805)
chr3 (131-233)||(29100436-29100535)
[»] chr1 (7 HSPs)
chr1 (128-212)||(8871316-8871400)
chr1 (136-212)||(28265822-28265898)
chr1 (131-178)||(2263275-2263322)
chr1 (131-198)||(25116426-25116492)
chr1 (130-212)||(50167444-50167526)
chr1 (130-212)||(50169466-50169548)
chr1 (130-199)||(45644624-45644693)
[»] chr7 (5 HSPs)
chr7 (130-212)||(12098128-12098210)
chr7 (134-197)||(18396136-18396199)
chr7 (138-212)||(36146678-36146752)
chr7 (130-212)||(41317703-41317785)
chr7 (130-199)||(8153160-8153228)
[»] chr5 (1 HSPs)
chr5 (135-198)||(3325748-3325811)
[»] chr4 (9 HSPs)
chr4 (138-196)||(36463674-36463731)
chr4 (130-212)||(45687452-45687534)
chr4 (130-212)||(52467611-52467692)
chr4 (165-212)||(37740491-37740538)
chr4 (142-212)||(37755181-37755251)
chr4 (130-178)||(4587788-4587836)
chr4 (138-166)||(6677306-6677334)
chr4 (131-198)||(21704098-21704166)
chr4 (139-199)||(48143454-48143513)
[»] chr2 (5 HSPs)
chr2 (130-212)||(33162706-33162787)
chr2 (130-212)||(36773379-36773461)
chr2 (142-188)||(28671796-28671842)
chr2 (130-199)||(11067122-11067191)
chr2 (136-239)||(4560930-4561031)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 3232261 - 3232039
Alignment:
Q  19 cggagggttgaaatcgttgtgcgattttgaataatgttaagtactgcatgaaatcgttgcacaatttgtgcaaatcctggcatgcttttgatataggaca 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  3232261 cggagggttgaaatcgttgtgcgattttgaataatattaagtactgcatgaaatcgttgcacgatttgtgcaaatcctggcacgcttttgatataggaca 3232162  T
Q  119 nnnnnnn-aaggacactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttagagtta 217  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3232161 ttttttttaaggacactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttagagtta 3232062  T
Q  218 atagtgtctttggtgaagttctt 240  Q
    |||||||||||||||||||||||    
T  3232061 atagtgtctttggtgaagttctt 3232039  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 29796658 - 29796579
Alignment:
Q  132 actatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    |||||||||||||||||||||||||||||||| ||| | | |||||| ||||||||| ||||||||||  ||||| |||||    
T  29796658 actatataaggcttcattcttcatgttttgaggaga-cttcaagagagagaaacttgagaaatcaaaggaggtaactttag 29796579  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 32902519 - 32902459
Alignment:
Q  136 tataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatca 196  Q
    |||||| ||||||||||||||||||||| || || | |||||| |||||||||||||||||    
T  32902519 tataagacttcattcttcatgttttgaggagggcttcaagagagagaaacttgggaaatca 32902459  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 8863354 - 8863415
Alignment:
Q  131 cactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaa 193  Q
    ||||||||||||||||||||||||||||||| || |||| | |||||| | ||||||||||||    
T  8863354 cactatataaggcttcattcttcatgttttgggt-gagcttcaagagagaaaaacttgggaaa 8863415  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 18141651 - 18141732
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||| |||||||||||||||||| ||||||||||||| | |||||| ||||||| || ||||| |||  ||||| |||||    
T  18141651 acactatttaaggcttcattcttcat-ttttgagtagagcttcaagagagagaaactaggaaaatcgaaggaggtaattttag 18141732  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 5689101 - 5689170
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaag 199  Q
    ||||||| |||||||||||||||||| |||||   ||||| | |||||| ||||||| ||||||||||||    
T  5689101 acactatttaaggcttcattcttcattttttggtaagagcttcaagagagagaaactagggaaatcaaag 5689170  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 161
Target Start/End: Original strand, 7597433 - 7597463
Alignment:
Q  131 cactatataaggcttcattcttcatgttttg 161  Q
    |||||||||||||||||||||||||||||||    
T  7597433 cactatataaggcttcattcttcatgttttg 7597463  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 11712340 - 11712284
Alignment:
Q  131 cactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaactt 187  Q
    |||||||||||| ||||||||| |||||||  ||||||| | |||||| ||||||||    
T  11712340 cactatataaggtttcattctttatgttttaggtagagcttcaagagagagaaactt 11712284  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 40519535 - 40519468
Alignment:
Q  131 cactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaa 198  Q
    |||||||||||||||||||| |||||| ||||||||||| | |||||| ||||||||| |||||||||    
T  40519535 cactatataaggcttcattcatcatgtattgagtagagcttcaagagagagaaacttgagaaatcaaa 40519468  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 2075404 - 2075339
Alignment:
Q  133 ctatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaa 198  Q
    ||||||||||||||||||||||||||||||||   || | |||||| |||||||||||||||||||    
T  2075404 ctatataaggcttcattcttcatgttttgagtgaggcttcaagagagagaaacttgggaaatcaaa 2075339  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 44700829 - 44700748
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||| |||||||||||||||||| ||||||| ||||| | |||||| ||||||| ||||||||||||  ||||| |||||    
T  44700829 acactatttaaggcttcattcttcat-ttttgagaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttag 44700748  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 29196738 - 29196657
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||| |||||||||||||||||| ||||||| |||||   |||||| | ||||||||||||||||||  ||||| |||||    
T  29196738 acactatttaaggcttcattcttcattttttgag-agagctacaagagagaaaaacttgggaaatcaaaggaggtaactttag 29196657  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 9666805 - 9666738
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaa 198  Q
    ||||||| |||| ||||||||||||| ||||||||||||| | |||||| ||| ||| |||||||||||    
T  9666805 acactatttaagacttcattcttcat-ttttgagtagagcttcaagagagagacactagggaaatcaaa 9666738  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 29100535 - 29100436
Alignment:
Q  131 cactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttagagttaatagtgtctttgg 230  Q
    |||||| |||||||| |||||||||  |||| ||||||  || |||||||||||||||||||| |||||  || |||||||| |||   |||||||||||    
T  29100535 cactatttaaggctttattcttcattctttg-gtagagtttttagagaaagaaacttgggaaaccaaaggagggaagtttagggtt--gagtgtctttgg 29100439  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 8871400 - 8871316
Alignment:
Q  128 ggacactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||||| |||||||||||||||||||||||  ||||||| | |||||| ||||||| |||| |||||||  ||||| |||||    
T  8871400 ggacactatttaaggcttcattcttcatgtttttggtagagcttcaagagagagaaactagggatatcaaagcaggtaactttag 8871316  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 28265898 - 28265822
Alignment:
Q  136 tataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    |||||||||||||||||||| ||||| | ||||| | |||||| ||||||| ||||||||||||  ||||| |||||    
T  28265898 tataaggcttcattcttcattttttgggaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttag 28265822  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 2263322 - 2263275
Alignment:
Q  131 cactatataaggcttcattcttcatgttttgagtagagcattaagaga 178  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||||||    
T  2263322 cactatataaggcttcattcttcatgttttgtgtagagcgtcaagaga 2263275  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 25116426 - 25116492
Alignment:
Q  131 cactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaa 198  Q
    ||||||||||| ||||||||||||||||||||| |||| || |||||| |||||||||  ||||||||    
T  25116426 cactatataagtcttcattcttcatgttttgag-agagtatgaagagagagaaacttgaaaaatcaaa 25116492  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 50167526 - 50167444
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||| |||||||||||||||||| |||||   ||||| | |||||| ||||||| ||||||||||||  ||||| |||||    
T  50167526 acactatttaaggcttcattcttcattttttggtaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttag 50167444  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 50169548 - 50169466
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||| |||||||||||||||||| |||||   ||||| | |||||| ||||||| ||||||||||||  ||||| |||||    
T  50169548 acactatttaaggcttcattcttcattttttggtaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttag 50169466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 45644693 - 45644624
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaag 199  Q
    ||||||| |||||||| ||||||||| ||||| | ||||| | |||||| | ||||| ||||||||||||    
T  45644693 acactatttaaggctttattcttcattttttgggaagagcttcaagagagaaaaactagggaaatcaaag 45644624  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 12098210 - 12098128
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||| |||||||||||||||||| ||||| | ||||| | |||||| | ||||||||||||||||||  ||||| |||||    
T  12098210 acactatttaaggcttcattcttcattttttgggaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaactttag 12098128  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 18396136 - 18396199
Alignment:
Q  134 tatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaa 197  Q
    |||||||| |||||||||||||||||| |||||||| | |||||| |||||||| ||| |||||    
T  18396136 tatataagacttcattcttcatgttttaagtagagcttcaagagagagaaactttggatatcaa 18396199  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 36146752 - 36146678
Alignment:
Q  138 taaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    |||||||||||||||||| ||||| | ||||| | |||||| | ||||||||||||||||||  ||||| |||||    
T  36146752 taaggcttcattcttcattttttgggaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaactttag 36146678  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 41317785 - 41317703
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||| |||||||||||||||||| |||||   ||||| | |||||| ||||||| ||||||||||||  ||||| |||||    
T  41317785 acactatttaaggcttcattcttcattttttggtaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttag 41317703  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 8153160 - 8153228
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaag 199  Q
    ||||||| ||||| |||||||||||| ||||||| ||||| | |||||| ||||||| || |||||||||    
T  8153160 acactatttaaggtttcattcttcat-ttttgagaagagcttcaagagagagaaactaggaaaatcaaag 8153228  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 3325748 - 3325811
Alignment:
Q  135 atataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaa 198  Q
    |||||| |||||||| ||||||||||  ||||||| |||||||| ||||| |||||||||||||    
T  3325748 atataatgcttcatttttcatgttttaggtagagctttaagagagagaaaattgggaaatcaaa 3325811  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 36463731 - 36463674
Alignment:
Q  138 taaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatca 196  Q
    |||||||||||||||||| ||||||||||||| | |||||| | |||||||||||||||    
T  36463731 taaggcttcattcttcat-ttttgagtagagcttcaagagagaaaaacttgggaaatca 36463674  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 45687534 - 45687452
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||| |||||||||||||||||| ||||||  || || | |||||| ||||||| ||||||||||||  ||||| |||||    
T  45687534 acactatttaaggcttcattcttcattttttgaaaagggcttcaagagagagaaactagggaaatcaaaggaggtaactttag 45687452  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 52467692 - 52467611
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||| |||||||||||||||||| |||||||| |||| | |||||| ||||||| ||| ||||||||  ||||| |||||    
T  52467692 acactatttaaggcttcattcttcat-ttttgagtggagcttcaagagagagaaactagggtaatcaaaggaggtaattttag 52467611  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 37740491 - 37740538
Alignment:
Q  165 agagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||| |||||| ||||||||||||||||||||  |||||||||||    
T  37740491 agagcatgaagagagagaaacttgggaaatcaaaggaggtaagtttag 37740538  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 37755251 - 37755181
Alignment:
Q  142 gcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||||||||||||||||||  |||  | |||||| |||||||||| |||||||||  ||||| |||||    
T  37755251 gcttcattcttcatgttttgagatgagtttcaagagagagaaacttggaaaatcaaaggaggtaactttag 37755181  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 4587788 - 4587836
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagaga 178  Q
    |||||||| ||| ||||||||||||||||||||| ||||| | ||||||    
T  4587788 acactataaaagacttcattcttcatgttttgaggagagcttcaagaga 4587836  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 6677306 - 6677334
Alignment:
Q  138 taaggcttcattcttcatgttttgagtag 166  Q
    |||||||||||||||||||||||||||||    
T  6677306 taaggcttcattcttcatgttttgagtag 6677334  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 21704166 - 21704098
Alignment:
Q  131 cactatataaggcttcattcttcatgttttgagtaga-gcattaagagaaagaaacttgggaaatcaaa 198  Q
    |||||| |||| ||||||| ||||||||||| ||||| || | |||||| ||||||||| |||||||||    
T  21704166 cactatttaagacttcatttttcatgttttgtgtagaggcttcaagagagagaaacttgagaaatcaaa 21704098  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 48143513 - 48143454
Alignment:
Q  139 aaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaag 199  Q
    |||||||||||||||||||||||| | |||  |||||||| ||||  ||||||||||||||    
T  48143513 aaggcttcattcttcatgttttgaat-gaggcttaagagagagaatattgggaaatcaaag 48143454  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 33162787 - 33162706
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||| |||||||||||||||||| |||| ||||||   | |||||| ||||||||||||||||||||  ||||| |||||    
T  33162787 acactatttaaggcttcattcttcatttttt-agtagaatttcaagagagagaaacttgggaaatcaaaggaggtaattttag 33162706  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 36773379 - 36773461
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttag 212  Q
    ||||||| |||| ||||||||||||| |||||  |||||| | |||||| ||||||| ||||||||||||  ||||| |||||    
T  36773379 acactatttaagacttcattcttcattttttgtatagagcttcaagagagagaaactagggaaatcaaaggaggtaactttag 36773461  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 28671796 - 28671842
Alignment:
Q  142 gcttcattcttcatgttttgagtagagcattaagagaaagaaacttg 188  Q
    ||||||||||||||||||||||||| || | |||||| |||||||||    
T  28671796 gcttcattcttcatgttttgagtagggcttcaagagagagaaacttg 28671842  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 11067122 - 11067191
Alignment:
Q  130 acactatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaag 199  Q
    ||||||| |||  ||||||||||||| ||||||| || || | |||||| ||||||| ||||||||||||    
T  11067122 acactatttaaaacttcattcttcattttttgaggagggcttcaagagagagaaactagggaaatcaaag 11067191  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 239
Target Start/End: Original strand, 4560930 - 4561031
Alignment:
Q  136 tataaggcttcattcttcatgttttgagtagagcattaagagaaagaaacttgggaaatcaaagatggtaagtttagagttaatagtgtctttggtgaag 235  Q
    |||||| |||||||||||||||||| || | | | | |||||| | |||||| |||||||| ||  | ||| |||||||||   ||||||||||||||||    
T  4560930 tataagacttcattcttcatgtttttagaataacttcaagagagaaaaacttaggaaatcagaggagataactttagagtt--gagtgtctttggtgaag 4561027  T
Q  236 ttct 239  Q
    ||||    
T  4561028 ttct 4561031  T

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