View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17178_low_8 (Length: 239)
Name: NF17178_low_8
Description: NF17178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17178_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 49 - 238
Target Start/End: Complemental strand, 18646732 - 18646543
Alignment:
| Q |
49 |
gttaaacaacactttataatctaaataaaaggttttagttgaagatgtcattgcatcgctctcaaatattaatacactctcaaagtttgtgttccccatt |
148 |
Q |
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| T |
18646732 |
gttaaacaacactttataatctaaataaaaggttttagttgaagatgtcattccattgctctcaaatattaatacactctcaaagtttgtgttccccatt |
18646633 |
T |
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| Q |
149 |
ttattcttgttttgattgtgtagttggtatcaccttttcaccaattacatgcctatatgaaccatgtactcatatatgatatactatagt |
238 |
Q |
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| T |
18646632 |
ttattcttgttttgattgtgtagttggtatcaccttttcaccaattacgtgcctatatgaaccatgtactcatatatgatatactatagt |
18646543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 18649657 - 18649551
Alignment:
| Q |
130 |
aaagtttgtgttccccattttattcttgttttgattgtgtagttggtatcaccttttcaccaattacatgcctatatgaaccatgtactcatatatgata |
229 |
Q |
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| T |
18649657 |
aaagtttgtgttcactattttatgctttttttgattgtgttggtggtatcaccttttcaccaattacgtgcctatatgaaccatgtactcatataggata |
18649558 |
T |
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| Q |
230 |
tactata |
236 |
Q |
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| T |
18649557 |
tactata |
18649551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 18649978 - 18649896
Alignment:
| Q |
49 |
gttaaacaacactttataatctaaataaaaggttttagttgaagatgtcattgcatcgctctcaaatattaatacactctcaa |
131 |
Q |
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| T |
18649978 |
gttaaacaacactttatagtcaaaataaaaggttttagttgaagatgtccttgcattactctcaaatattaatacactctcaa |
18649896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 130
Target Start/End: Complemental strand, 18650843 - 18650800
Alignment:
| Q |
87 |
ttgaagatgtcattgcatcgctctcaaatattaatacactctca |
130 |
Q |
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| T |
18650843 |
ttgaagatgtcattgcattactctcaaatattaatacactctca |
18650800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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