View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17178_low_9 (Length: 232)
Name: NF17178_low_9
Description: NF17178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17178_low_9 |
 | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 11610353 - 11610188
Alignment:
| Q |
52 |
gttcatactgttgcaccaagaggttatccttagcctccttaacttactgatttccttaataagtagaacacagtaactcaaatatggctttaatagtgga |
151 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||| || |||||| |||| | |
|
|
| T |
11610353 |
gttcatactgttgcaccaagaggttatatttagcctccttaacttactggtttccttaataaatagaacacagtaactcaaatctgactttaacagtgaa |
11610254 |
T |
|
| Q |
152 |
tttatcaactatattggtgtactttgagtgaggcaaagcttcaaccaaaacacaacgcaccctatg |
217 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11610253 |
tttatcaactattttggtatactttgagtgaggcaaagcttcaaccaaaacacaacgcactctatg |
11610188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 9121 - 9025
Alignment:
| Q |
102 |
tttccttaataagtagaacacagtaactcaaatatggctttaatagtggatttatcaactatattggtgtactttgagtgaggcaaagcttcaacca |
198 |
Q |
| |
|
||||||| |||||||||||||| | | ||||| ||||| ||| |||||||||||| || || |||||||| ||||| |||||| || |||| |||| |
|
|
| T |
9121 |
tttccttcataagtagaacacaatgattcaaagatggcattagcagtggatttatcgacaatcttggtgtattttgaatgaggccaatcttccacca |
9025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 20310507 - 20310605
Alignment:
| Q |
102 |
tttccttaataagtagaacacagtaactcaaatatggctttaatagtggatttatcaactatattggtgtactttgagtgaggcaaagcttcaaccaaaa |
201 |
Q |
| |
|
||||||| ||||||||||||| || | || || || |||||| |||||||||| ||||| || |||||||||| | | ||||| | |||||||||||||| |
|
|
| T |
20310507 |
tttccttcataagtagaacac-gtgattcgaagatagctttagtagtggatttgtcaacaattttggtgtactctaaatgaggaagagcttcaaccaaaa |
20310605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 21097140 - 21097238
Alignment:
| Q |
102 |
tttccttaataagtagaacacagtaactcaaatatggctttaatagtggatttatcaactatattggtgtactttgagtgaggcaaagcttcaaccaaaa |
201 |
Q |
| |
|
||||||| ||||||||||||| || | || || || |||||| |||||||||| ||||| || |||||||||| | | ||||| | |||||||||||||| |
|
|
| T |
21097140 |
tttccttcataagtagaacac-gtgattcgaagatagctttagtagtggatttgtcaacaattttggtgtactctaaatgaggaagagcttcaaccaaaa |
21097238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University